Variant report

Variant	rs12890560
Chromosome Location	chr14:69674352-69674353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10083451	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10131077	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10132533	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10135102	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10139873	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10141040	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10146339	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10147119	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10147369	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10149232	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11158790	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11158792	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11158795	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158798	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622889	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11625374	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431706	0.85[AMR][1000 genomes]
rs12434764	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12437418	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12879406	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12886715	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889849	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056153	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2139540	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2139541	0.85[AMR][1000 genomes]
rs2331919	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2331956	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28613298	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3211166	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34999390	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56008928	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980267	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61980270	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61980284	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573869	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6573872	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71423349	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7148045	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8005658	0.85[AMR][1000 genomes]
rs8008184	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9323522	0.81[EUR][1000 genomes]
rs9323524	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12890560	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:69658800-69702400	Weak transcription	Gastric	stomach
3	chr14:69659000-69676200	Weak transcription	Left Ventricle	heart
4	chr14:69659000-69677000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:69659000-69679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69659000-69695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:69659000-69695400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
9	chr14:69659200-69676200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:69659200-69676400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:69659200-69679200	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:69659200-69679400	Weak transcription	Aorta	Aorta
13	chr14:69659200-69695600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
15	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
16	chr14:69659400-69675000	Weak transcription	Fetal Intestine Large	intestine
17	chr14:69659400-69676000	Weak transcription	Brain Anterior Caudate	brain
18	chr14:69659400-69676600	Weak transcription	Adipose Nuclei	Adipose
19	chr14:69659400-69678600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:69659400-69679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:69659400-69695600	Weak transcription	HSMM	muscle
22	chr14:69659600-69676200	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:69659600-69676200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:69659600-69676400	Weak transcription	Fetal Heart	heart
25	chr14:69659600-69676600	Weak transcription	Fetal Lung	lung
26	chr14:69659600-69679400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:69659600-69695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr14:69659600-69695400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr14:69659800-69675200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:69659800-69675200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:69659800-69676200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr14:69659800-69676200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:69659800-69676200	Weak transcription	Brain Angular Gyrus	brain
34	chr14:69659800-69676400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr14:69659800-69676400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:69659800-69676400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr14:69659800-69676600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:69659800-69676600	Weak transcription	Brain Substantia Nigra	brain
39	chr14:69659800-69680800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr14:69659800-69695600	Weak transcription	Lung	lung
41	chr14:69660200-69676200	Weak transcription	Fetal Brain Female	brain
42	chr14:69660600-69676400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:69660600-69676400	Weak transcription	Liver	Liver
44	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
45	chr14:69660800-69683400	Weak transcription	HepG2	liver
46	chr14:69660800-69695400	Weak transcription	Thymus	Thymus
47	chr14:69663000-69676200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr14:69663400-69675200	Weak transcription	Primary T cells from cord blood	blood
49	chr14:69663400-69696000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr14:69664400-69693200	Weak transcription	Psoas Muscle	Psoas

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