Variant report

Variant	rs10141040
Chromosome Location	chr14:69612105-69612106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69607266..69609423-chr14:69610673..69612601,2	K562	blood:
2	chr14:69612026..69613755-chr14:69618711..69620475,2	MCF-7	breast:
3	chr14:69606804..69609751-chr14:69611756..69613972,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10083451	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10130013	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10131077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132533	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10134578	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10135102	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10135643	0.81[ASN][1000 genomes]
rs10135971	0.84[ASN][1000 genomes]
rs10139873	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10143302	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10143769	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145565	0.81[EUR][1000 genomes]
rs10146339	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147119	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10147369	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148614	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10149232	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158780	0.81[ASN][1000 genomes]
rs11158782	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11158787	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158790	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158792	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11158795	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158798	0.80[EUR][1000 genomes]
rs1147481	0.90[ASN][1000 genomes]
rs11622889	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625374	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11628126	0.87[ASN][1000 genomes]
rs12431846	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12434775	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12435594	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12437418	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12589028	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1275407	0.90[ASN][1000 genomes]
rs1275415	0.98[ASN][1000 genomes]
rs12879406	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12886715	0.80[EUR][1000 genomes]
rs12890560	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1892297	0.98[ASN][1000 genomes]
rs1914004	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2001998	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2056153	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2139540	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2331919	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28613298	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34999390	0.80[EUR][1000 genomes]
rs4338726	0.81[ASN][1000 genomes]
rs4899280	0.81[EUR][1000 genomes]
rs56008928	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61980267	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61980270	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61980284	0.81[EUR][1000 genomes]
rs6573869	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573872	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71423349	0.80[AMR][1000 genomes]
rs7160629	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8005658	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8008184	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8017103	0.81[ASN][1000 genomes]
rs9323522	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9323524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10141040	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69596600-69612800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:69596600-69613800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:69596600-69614800	Weak transcription	Fetal Brain Female	brain
5	chr14:69596600-69614800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:69596600-69615000	Weak transcription	Thymus	Thymus
7	chr14:69596600-69615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:69596600-69615400	Weak transcription	Placenta	Placenta
9	chr14:69596600-69616400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:69596600-69617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:69597600-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:69600000-69617000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:69600400-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:69600400-69616800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:69600400-69616800	Weak transcription	Fetal Brain Male	brain
16	chr14:69600600-69617800	Weak transcription	Aorta	Aorta
17	chr14:69601000-69613200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:69601000-69615600	Weak transcription	HMEC	breast
19	chr14:69601000-69615800	Weak transcription	A549	lung
20	chr14:69601000-69616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:69601000-69617000	Weak transcription	Ovary	ovary
22	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
23	chr14:69601400-69616000	Weak transcription	Hela-S3	cervix
24	chr14:69604800-69616800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:69605000-69616600	Weak transcription	Brain Germinal Matrix	brain
26	chr14:69605200-69614800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:69605200-69616800	Weak transcription	Small Intestine	intestine
28	chr14:69605200-69617400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr14:69605400-69615000	Weak transcription	HSMMtube	muscle
30	chr14:69605400-69617000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:69605400-69617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:69605400-69617600	Weak transcription	Brain Substantia Nigra	brain
33	chr14:69605600-69613800	Weak transcription	HUVEC	blood vessel
34	chr14:69605600-69614000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:69605600-69614000	Weak transcription	Fetal Lung	lung
36	chr14:69605600-69614000	Weak transcription	HSMM	muscle
37	chr14:69605600-69615400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:69605600-69615400	Weak transcription	NH-A	brain
39	chr14:69605600-69616000	Weak transcription	Fetal Heart	heart
40	chr14:69605600-69616800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr14:69605600-69617600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:69605600-69617800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr14:69605800-69613600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:69605800-69613800	Weak transcription	Adipose Nuclei	Adipose
45	chr14:69605800-69614600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr14:69605800-69614800	Weak transcription	NHDF-Ad	bronchial
47	chr14:69605800-69615400	Weak transcription	Left Ventricle	heart
48	chr14:69605800-69615400	Weak transcription	NHEK	skin
49	chr14:69605800-69617000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:69605800-69617400	Weak transcription	Placenta Amnion	Placenta Amnion

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