Variant report

Variant	rs10143769
Chromosome Location	chr14:69595427-69595428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69593279..69595592-chr14:69619666..69622024,2	MCF-7	breast:
2	chr14:69582977..69587212-chr14:69591964..69596113,3	MCF-7	breast:
3	chr14:69594222..69597664-chr14:69598109..69600741,4	MCF-7	breast:
4	chr14:69595020..69597748-chr14:69657306..69660377,4	MCF-7	breast:
5	chr14:69595285..69597490-chr14:69864217..69866963,2	K562	blood:

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000258957	Chromatin interaction
ENSG00000029364	Chromatin interaction
ENSG00000139990	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10083451	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10130013	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10131077	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10132533	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10135102	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10139873	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10141040	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10146339	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10147119	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10147369	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10149232	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11158787	0.82[EUR][1000 genomes]
rs11158790	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11158792	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11158795	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11622889	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12435594	0.82[EUR][1000 genomes]
rs12437418	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12879406	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2056153	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2139540	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2331919	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28613298	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56008928	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61980267	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61980270	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6573869	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573872	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8005658	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8008184	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9323522	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9323524	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10143769	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
2	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:69568600-69596000	Weak transcription	K562	blood
4	chr14:69568800-69595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:69582000-69595800	Weak transcription	Fetal Heart	heart
6	chr14:69582000-69595800	Weak transcription	A549	lung
7	chr14:69582200-69596000	Weak transcription	Small Intestine	intestine
8	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69584800-69595600	Weak transcription	Brain Germinal Matrix	brain
10	chr14:69584800-69596200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:69584800-69596200	Weak transcription	Stomach Mucosa	stomach
12	chr14:69585000-69595800	Weak transcription	NHLF	lung
13	chr14:69585000-69596000	Weak transcription	Brain Substantia Nigra	brain
14	chr14:69585000-69596200	Weak transcription	Colonic Mucosa	Colon
15	chr14:69585000-69599600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr14:69585000-69600000	Weak transcription	Right Ventricle	heart
17	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
18	chr14:69585200-69595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:69585200-69595800	Weak transcription	NHEK	skin
20	chr14:69585200-69596200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:69585200-69600000	Weak transcription	Aorta	Aorta
22	chr14:69585200-69600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:69585200-69605800	Weak transcription	Lung	lung
24	chr14:69585400-69595800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:69585400-69595800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr14:69585400-69595800	Weak transcription	Fetal Brain Male	brain
27	chr14:69585400-69596200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:69585400-69596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:69585600-69595600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:69585600-69595600	Weak transcription	Brain Anterior Caudate	brain
31	chr14:69585600-69595800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr14:69585600-69595800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:69585600-69595800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr14:69585600-69595800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr14:69585600-69595800	Weak transcription	Fetal Brain Female	brain
36	chr14:69585600-69596000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:69585600-69596000	Weak transcription	HSMMtube	muscle
38	chr14:69585600-69596200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:69585600-69596400	Weak transcription	Fetal Stomach	stomach
40	chr14:69585600-69600200	Weak transcription	Esophagus	oesophagus
41	chr14:69585600-69609200	Weak transcription	Fetal Kidney	kidney
42	chr14:69585800-69596200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr14:69586000-69595800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr14:69586000-69595800	Weak transcription	NH-A	brain
45	chr14:69586000-69596000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:69586000-69596200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:69586000-69596200	Weak transcription	Dnd41	blood
48	chr14:69586000-69596200	Weak transcription	HUVEC	blood vessel
49	chr14:69586400-69596200	Weak transcription	GM12878-XiMat	blood
50	chr14:69586400-69596400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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