Variant report

Variant	rs2139541
Chromosome Location	chr14:69719700-69719701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69717943..69720640-chr14:69722877..69724825,2	K562	blood:

rs_ID	r²[population]
rs10132533	0.80[AMR][1000 genomes]
rs10140798	0.86[ASN][1000 genomes]
rs11158795	0.80[AMR][1000 genomes]
rs11158798	0.86[AMR][1000 genomes]
rs11625374	0.84[AMR][1000 genomes]
rs12431706	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434764	0.91[AMR][1000 genomes]
rs12886715	0.87[AMR][1000 genomes]
rs12889849	0.86[AMR][1000 genomes]
rs12890560	0.85[AMR][1000 genomes]
rs2331956	0.86[AMR][1000 genomes]
rs3211166	0.91[AMR][1000 genomes]
rs34999390	0.87[AMR][1000 genomes]
rs4899293	0.97[ASN][1000 genomes]
rs61980270	0.80[AMR][1000 genomes]
rs61980284	0.86[AMR][1000 genomes]
rs71423349	0.84[AMR][1000 genomes]
rs7148045	0.91[AMR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs2139541	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
2	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
3	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69706000-69722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:69708400-69721800	Weak transcription	Fetal Brain Female	brain
6	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
7	chr14:69708600-69722000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:69708800-69723000	Weak transcription	Fetal Intestine Small	intestine
9	chr14:69709200-69722800	Weak transcription	Brain Germinal Matrix	brain
10	chr14:69709400-69722600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
12	chr14:69709400-69726400	Weak transcription	Gastric	stomach
13	chr14:69709800-69725400	Weak transcription	Brain Angular Gyrus	brain
14	chr14:69714800-69721200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:69714800-69726200	Weak transcription	Aorta	Aorta
16	chr14:69716600-69724600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:69716800-69722000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:69717000-69725200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69717200-69719800	Weak transcription	HSMMtube	muscle
20	chr14:69717400-69722600	Weak transcription	Right Ventricle	heart
21	chr14:69717400-69723400	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:69717400-69725800	Weak transcription	Left Ventricle	heart
23	chr14:69718400-69722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr14:69718400-69722000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr14:69719600-69719800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:69719600-69719800	Enhancers	Fetal Muscle Trunk	muscle
27	chr14:69719600-69719800	Enhancers	HMEC	breast
28	chr14:69719600-69720000	Enhancers	HSMM	muscle
29	chr14:69719600-69720600	Enhancers	Fetal Muscle Leg	muscle

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