Variant report

Variant	rs4902698
Chromosome Location	chr14:69659619-69659620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69614281..69621283-chr14:69656459..69660724,14	MCF-7	breast:
2	chr14:69616829..69621784-chr14:69657152..69660113,5	K562	blood:
3	chr14:69658198..69659814-chr14:69694580..69696739,2	K562	blood:
4	chr14:69658868..69661377-chr14:69866532..69868525,2	MCF-7	breast:
5	chr14:69658144..69660515-chr17:56072182..56074557,2	MCF-7	breast:
6	chr14:69618275..69624022-chr14:69655650..69660294,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000139990	Chromatin interaction
ENSG00000264112	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10132533	0.90[CHB][hapmap]
rs10139153	0.89[ASN][1000 genomes]
rs10139274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10146339	0.81[CHB][hapmap]
rs10149232	0.81[CHB][hapmap]
rs10498528	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs11158795	0.88[CHB][hapmap]
rs11158796	0.89[ASN][1000 genomes]
rs11158798	0.90[CHB][hapmap]
rs12879406	0.90[CHB][hapmap]
rs12886715	1.00[CHB][hapmap]
rs12889849	0.90[CHB][hapmap]
rs17106693	1.00[AMR][1000 genomes]
rs17106717	1.00[AMR][1000 genomes]
rs17106754	1.00[CHB][hapmap]
rs17106800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17106817	0.89[CHB][hapmap]
rs1890944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1892297	0.81[CHB][hapmap]
rs1914004	0.81[CHB][hapmap]
rs3211166	0.88[CHB][hapmap]
rs3742899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3742900	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4143922	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs4243633	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4899279	1.00[AMR][1000 genomes]
rs4899283	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4899290	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4902691	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4902704	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56788993	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57422627	1.00[AMR][1000 genomes]
rs57674546	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6573869	0.90[CHB][hapmap]
rs7151331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7160629	0.81[CHB][hapmap]
rs7494646	1.00[AMR][1000 genomes]
rs8007859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8008735	1.00[CHB][hapmap]
rs8008829	1.00[CHB][hapmap]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69657800-69659800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr14:69657800-69659800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:69657800-69659800	Active TSS	Brain Cingulate Gyrus	brain
4	chr14:69658800-69659800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:69658800-69659800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr14:69658800-69662600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:69658800-69673200	Weak transcription	Spleen	Spleen
8	chr14:69658800-69695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:69658800-69702400	Weak transcription	Gastric	stomach
10	chr14:69659000-69660200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:69659000-69660600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr14:69659000-69660800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr14:69659000-69661000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr14:69659000-69661400	Enhancers	Fetal Thymus	thymus
15	chr14:69659000-69663800	Weak transcription	Small Intestine	intestine
16	chr14:69659000-69664200	Weak transcription	Psoas Muscle	Psoas
17	chr14:69659000-69672800	Weak transcription	Esophagus	oesophagus
18	chr14:69659000-69676200	Weak transcription	Left Ventricle	heart
19	chr14:69659000-69677000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:69659000-69679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:69659000-69695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:69659000-69695400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
24	chr14:69659200-69659800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr14:69659200-69660600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr14:69659200-69660600	Enhancers	Liver	Liver
27	chr14:69659200-69672800	Weak transcription	Fetal Stomach	stomach
28	chr14:69659200-69673200	Weak transcription	Ovary	ovary
29	chr14:69659200-69676200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr14:69659200-69676400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:69659200-69679200	Weak transcription	Fetal Muscle Leg	muscle
32	chr14:69659200-69679400	Weak transcription	Aorta	Aorta
33	chr14:69659200-69695600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
35	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
36	chr14:69659400-69659800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr14:69659400-69659800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:69659400-69659800	Enhancers	Brain Substantia Nigra	brain
39	chr14:69659400-69659800	Enhancers	Fetal Intestine Small	intestine
40	chr14:69659400-69659800	Enhancers	Right Ventricle	heart
41	chr14:69659400-69659800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr14:69659400-69659800	Bivalent Enhancer	Dnd41	blood
43	chr14:69659400-69660000	Weak transcription	NHDF-Ad	bronchial
44	chr14:69659400-69660200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:69659400-69660400	Enhancers	Primary T cells from cord blood	blood
46	chr14:69659400-69660800	Enhancers	HepG2	liver
47	chr14:69659400-69662800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:69659400-69666600	Weak transcription	Fetal Kidney	kidney
49	chr14:69659400-69666800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr14:69659400-69667600	Weak transcription	NH-A	brain

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