Variant report

Variant	rs4899279
Chromosome Location	chr14:69513480-69513481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69511704..69514536-chr14:69514659..69516303,2	K562	blood:
2	chr14:69510523..69515043-chr14:69515218..69517910,6	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10132533	0.90[CHB][hapmap]
rs10139274	1.00[CHB][hapmap]
rs10146339	0.81[CHB][hapmap]
rs10149232	0.81[CHB][hapmap]
rs10498528	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs11158795	0.88[CHB][hapmap]
rs11158798	0.90[CHB][hapmap]
rs11628025	0.88[ASN][1000 genomes]
rs12879406	0.90[CHB][hapmap]
rs12886715	1.00[CHB][hapmap]
rs12889849	0.90[CHB][hapmap]
rs17106693	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17106717	1.00[AMR][1000 genomes]
rs17106754	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17106800	1.00[AMR][1000 genomes]
rs1890944	1.00[CHB][hapmap]
rs1892297	0.81[CHB][hapmap]
rs1914004	0.81[CHB][hapmap]
rs28436153	0.89[ASN][1000 genomes]
rs3211166	0.88[CHB][hapmap]
rs3742899	1.00[CHB][hapmap]
rs3742900	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs4143922	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs4243633	1.00[CHB][hapmap]
rs4899283	1.00[AMR][1000 genomes]
rs4899290	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs4902689	0.82[ASN][1000 genomes]
rs4902691	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs4902698	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs4902704	1.00[CHB][hapmap]
rs56788993	1.00[AMR][1000 genomes]
rs57422627	1.00[AMR][1000 genomes]
rs57674546	1.00[AMR][1000 genomes]
rs6573869	0.90[CHB][hapmap]
rs7151331	1.00[CHB][hapmap]
rs7160629	0.81[CHB][hapmap]
rs7494646	1.00[AMR][1000 genomes]
rs8007859	1.00[CHB][hapmap]
rs8008735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8008829	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69508800-69513800	Enhancers	Brain Hippocampus Middle	brain
2	chr14:69508800-69513800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:69508800-69513800	Enhancers	NHDF-Ad	bronchial
4	chr14:69508800-69514600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:69508800-69516600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:69508800-69518000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:69509000-69513800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:69509400-69513800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:69509400-69513800	Enhancers	Ovary	ovary
10	chr14:69509400-69514000	Enhancers	NH-A	brain
11	chr14:69509600-69513800	Enhancers	Colonic Mucosa	Colon
12	chr14:69509600-69513800	Enhancers	Esophagus	oesophagus
13	chr14:69509600-69513800	Enhancers	Fetal Muscle Trunk	muscle
14	chr14:69509600-69513800	Enhancers	Psoas Muscle	Psoas
15	chr14:69509600-69513800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr14:69509600-69513800	Enhancers	Rectal Smooth Muscle	rectum
17	chr14:69509600-69514400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:69509600-69515600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr14:69509600-69516400	Enhancers	HUVEC	blood vessel
20	chr14:69509800-69513800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr14:69509800-69513800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:69509800-69513800	Enhancers	Right Atrium	heart
23	chr14:69509800-69513800	Enhancers	Small Intestine	intestine
24	chr14:69509800-69513800	Enhancers	NHLF	lung
25	chr14:69509800-69514000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr14:69509800-69514400	Enhancers	Colon Smooth Muscle	Colon
27	chr14:69509800-69514400	Enhancers	Left Ventricle	heart
28	chr14:69509800-69517400	Enhancers	Placenta	Placenta
29	chr14:69509800-69517800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr14:69509800-69519000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr14:69510000-69514000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr14:69510000-69514000	Enhancers	Fetal Lung	lung
33	chr14:69510000-69514000	Enhancers	Fetal Stomach	stomach
34	chr14:69510000-69514400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr14:69510000-69514400	Enhancers	Right Ventricle	heart
36	chr14:69510200-69513800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:69510200-69513800	Enhancers	Gastric	stomach
38	chr14:69510200-69514000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:69510200-69514400	Enhancers	Spleen	Spleen
40	chr14:69510200-69515400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr14:69510200-69515400	Enhancers	Osteobl	bone
42	chr14:69510400-69513800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69510400-69513800	Enhancers	Lung	lung
44	chr14:69510400-69514400	Enhancers	Aorta	Aorta
45	chr14:69510400-69515000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr14:69510400-69516200	Weak transcription	Primary T cells from cord blood	blood
47	chr14:69510400-69518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr14:69510600-69514000	Enhancers	Brain Cingulate Gyrus	brain
49	chr14:69510600-69516400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:69510600-69517800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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