Variant report

Variant	rs28436153
Chromosome Location	chr14:69541956-69541957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69444481..69448901-chr14:69538252..69542647,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10498528	0.89[ASN][1000 genomes]
rs17106693	0.84[ASN][1000 genomes]
rs17106717	0.89[ASN][1000 genomes]
rs17106754	0.89[ASN][1000 genomes]
rs4143922	0.89[ASN][1000 genomes]
rs4899279	0.89[ASN][1000 genomes]
rs4902693	0.89[ASN][1000 genomes]
rs57422627	0.89[ASN][1000 genomes]
rs8008735	0.89[ASN][1000 genomes]
rs8008829	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
2	chr14:69519200-69544600	Weak transcription	Stomach Mucosa	stomach
3	chr14:69519600-69546000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:69522400-69556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:69522600-69545600	Weak transcription	Pancreas	Pancrea
7	chr14:69523600-69545600	Weak transcription	Right Ventricle	heart
8	chr14:69523600-69550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:69523600-69553400	Weak transcription	Brain Angular Gyrus	brain
10	chr14:69523600-69556400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:69524000-69557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:69524800-69556600	Weak transcription	Fetal Brain Male	brain
13	chr14:69526800-69545600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:69527000-69545800	Weak transcription	Psoas Muscle	Psoas
15	chr14:69527000-69558200	Weak transcription	Esophagus	oesophagus
16	chr14:69528600-69545400	Weak transcription	Gastric	stomach
17	chr14:69528600-69547000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:69528600-69547800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:69528600-69550600	Weak transcription	Spleen	Spleen
20	chr14:69528600-69560200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:69528800-69550600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr14:69529600-69544600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr14:69529600-69545800	Weak transcription	Small Intestine	intestine
24	chr14:69534600-69542000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr14:69534800-69542200	Strong transcription	Fetal Thymus	thymus
26	chr14:69534800-69544600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:69534800-69544800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr14:69535200-69544000	Strong transcription	Fetal Muscle Leg	muscle
29	chr14:69535400-69544000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:69535600-69542200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr14:69535600-69565200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr14:69535800-69542200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:69535800-69542200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr14:69536000-69542200	Strong transcription	Fetal Intestine Large	intestine
35	chr14:69536000-69553200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:69536200-69542200	Strong transcription	Fetal Stomach	stomach
37	chr14:69536200-69543800	Weak transcription	HMEC	breast
38	chr14:69536200-69544000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:69536200-69544200	Weak transcription	A549	lung
40	chr14:69536200-69556400	Weak transcription	K562	blood
41	chr14:69536400-69543600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:69536400-69543600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:69536400-69543600	Weak transcription	HUVEC	blood vessel
44	chr14:69536400-69545200	Weak transcription	Aorta	Aorta
45	chr14:69536600-69543800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:69536600-69544000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:69536600-69544200	Weak transcription	NHLF	lung
48	chr14:69536600-69545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr14:69537000-69542200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:69537200-69543200	Weak transcription	Rectal Smooth Muscle	rectum

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