Variant report

Variant	rs10139274
Chromosome Location	chr14:69666852-69666853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69644238..69645870-chr14:69665780..69667892,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10132533	0.90[CHB][hapmap]
rs10133226	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10133341	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10134554	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10139153	0.86[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146339	0.81[CHB][hapmap]
rs10149232	0.81[CHB][hapmap]
rs10150493	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10498528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11158794	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158795	0.88[CHB][hapmap]
rs11158796	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158798	0.90[CHB][hapmap]
rs1147478	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs1147479	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs11848820	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1275405	0.80[EUR][1000 genomes]
rs1275408	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs1275409	0.80[EUR][1000 genomes]
rs1275410	0.80[EUR][1000 genomes]
rs1275411	0.82[CEU][hapmap]
rs1275418	0.80[EUR][1000 genomes]
rs1275420	0.87[CEU][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12879406	0.90[CHB][hapmap]
rs12886715	1.00[CHB][hapmap]
rs12887465	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12888526	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12889849	0.90[CHB][hapmap]
rs1464307	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs17106754	1.00[CHB][hapmap]
rs17106800	0.94[ASN][1000 genomes]
rs17106817	0.89[CHB][hapmap]
rs1710988	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs17836065	0.82[CEU][hapmap]
rs17836099	0.82[CEU][hapmap]
rs1890943	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1890944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892297	0.81[CHB][hapmap]
rs1914004	0.81[CHB][hapmap]
rs1959759	0.81[EUR][1000 genomes]
rs1965449	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs2014607	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs2090711	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2090712	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2096023	1.00[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2102923	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2102924	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2331953	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2331954	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs2331955	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3211166	0.88[CHB][hapmap]
rs3742899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4143922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4243633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4271533	0.80[EUR][1000 genomes]
rs4326982	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4899283	0.83[ASN][1000 genomes]
rs4899284	0.81[EUR][1000 genomes]
rs4899289	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4899290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4899292	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4902691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4902698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4902699	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902702	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs4902703	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56788993	0.81[ASN][1000 genomes]
rs57674546	0.81[ASN][1000 genomes]
rs61980269	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61981648	0.89[EUR][1000 genomes]
rs6573869	0.90[CHB][hapmap]
rs6573875	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6573876	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573877	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7148953	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7150127	0.82[EUR][1000 genomes]
rs7151331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151827	0.82[EUR][1000 genomes]
rs7157772	0.91[CEU][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7158145	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs7159186	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7160629	0.81[CHB][hapmap]
rs8007859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8008401	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8008735	1.00[CHB][hapmap]
rs8008829	1.00[CHB][hapmap]
rs8017744	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69673200	Weak transcription	Spleen	Spleen
2	chr14:69658800-69695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:69658800-69702400	Weak transcription	Gastric	stomach
4	chr14:69659000-69672800	Weak transcription	Esophagus	oesophagus
5	chr14:69659000-69676200	Weak transcription	Left Ventricle	heart
6	chr14:69659000-69677000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:69659000-69679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:69659000-69695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:69659000-69695400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
11	chr14:69659200-69672800	Weak transcription	Fetal Stomach	stomach
12	chr14:69659200-69673200	Weak transcription	Ovary	ovary
13	chr14:69659200-69676200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:69659200-69676400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:69659200-69679200	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:69659200-69679400	Weak transcription	Aorta	Aorta
17	chr14:69659200-69695600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
19	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
20	chr14:69659400-69667600	Weak transcription	NH-A	brain
21	chr14:69659400-69670600	Weak transcription	Brain Germinal Matrix	brain
22	chr14:69659400-69675000	Weak transcription	Fetal Intestine Large	intestine
23	chr14:69659400-69676000	Weak transcription	Brain Anterior Caudate	brain
24	chr14:69659400-69676600	Weak transcription	Adipose Nuclei	Adipose
25	chr14:69659400-69678600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:69659400-69679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:69659400-69695600	Weak transcription	HSMM	muscle
28	chr14:69659600-69671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:69659600-69673000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:69659600-69676200	Weak transcription	Brain Hippocampus Middle	brain
31	chr14:69659600-69676200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:69659600-69676400	Weak transcription	Fetal Heart	heart
33	chr14:69659600-69676600	Weak transcription	Fetal Lung	lung
34	chr14:69659600-69679400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:69659600-69695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr14:69659600-69695400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:69659800-69671000	Weak transcription	NHEK	skin
38	chr14:69659800-69671400	Weak transcription	HMEC	breast
39	chr14:69659800-69672800	Weak transcription	Fetal Intestine Small	intestine
40	chr14:69659800-69675200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:69659800-69675200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:69659800-69676200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr14:69659800-69676200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:69659800-69676200	Weak transcription	Brain Angular Gyrus	brain
45	chr14:69659800-69676400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr14:69659800-69676400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:69659800-69676400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:69659800-69676600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:69659800-69676600	Weak transcription	Brain Substantia Nigra	brain
50	chr14:69659800-69680800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links