Variant report

Variant	rs2014607
Chromosome Location	chr14:69589658-69589659
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69588946..69590991-chr14:69599196..69601563,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10133226	0.84[EUR][1000 genomes]
rs10133341	0.85[EUR][1000 genomes]
rs10139153	0.80[EUR][1000 genomes]
rs10139274	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs10150493	0.80[EUR][1000 genomes]
rs11158796	0.80[EUR][1000 genomes]
rs1147478	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147479	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848820	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1275405	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275408	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275409	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275410	0.95[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275411	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275412	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1275418	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275420	0.88[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs1464307	0.91[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1710988	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17836065	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836099	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890943	0.92[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890944	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs1959759	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965449	0.92[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090711	0.80[EUR][1000 genomes]
rs2090712	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2096023	0.83[CEU][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs2185490	0.83[CEU][hapmap]
rs2331953	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2331954	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs242097	1.00[ASW][hapmap]
rs35632281	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3742899	0.83[CEU][hapmap];0.80[TSI][hapmap]
rs4243633	0.83[CEU][hapmap]
rs45469294	1.00[ASN][1000 genomes]
rs4899284	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899289	0.82[CEU][hapmap]
rs4899292	0.92[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902699	0.83[CEU][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs4902702	0.92[CEU][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902704	0.83[CEU][hapmap]
rs61741172	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980269	0.80[EUR][1000 genomes]
rs61981647	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981648	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61981649	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573875	0.83[CEU][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs6573877	0.81[EUR][1000 genomes]
rs7148953	0.85[EUR][1000 genomes]
rs7150127	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151090	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151331	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs7151827	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157772	0.92[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs7158145	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7159186	0.83[CEU][hapmap]
rs761898	1.00[ASW][hapmap];0.84[TSI][hapmap]
rs8007859	0.83[CEU][hapmap]
rs8017744	0.86[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2014607	RAD51L1	cis	parietal	SCAN
rs2014607	ADAM21	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
2	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:69568600-69596000	Weak transcription	K562	blood
4	chr14:69568800-69595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:69582000-69595800	Weak transcription	Fetal Heart	heart
6	chr14:69582000-69595800	Weak transcription	A549	lung
7	chr14:69582200-69596000	Weak transcription	Small Intestine	intestine
8	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69584800-69595600	Weak transcription	Brain Germinal Matrix	brain
10	chr14:69584800-69596200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:69584800-69596200	Weak transcription	Stomach Mucosa	stomach
12	chr14:69585000-69590000	Weak transcription	Gastric	stomach
13	chr14:69585000-69595400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:69585000-69595800	Weak transcription	NHLF	lung
15	chr14:69585000-69596000	Weak transcription	Brain Substantia Nigra	brain
16	chr14:69585000-69596200	Weak transcription	Colonic Mucosa	Colon
17	chr14:69585000-69599600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:69585000-69600000	Weak transcription	Right Ventricle	heart
19	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
20	chr14:69585200-69590400	Weak transcription	Pancreas	Pancrea
21	chr14:69585200-69595200	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:69585200-69595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:69585200-69595800	Weak transcription	NHEK	skin
24	chr14:69585200-69596200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:69585200-69600000	Weak transcription	Aorta	Aorta
26	chr14:69585200-69600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:69585200-69605800	Weak transcription	Lung	lung
28	chr14:69585400-69595800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:69585400-69595800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:69585400-69595800	Weak transcription	Fetal Brain Male	brain
31	chr14:69585400-69596200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:69585400-69596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:69585600-69591200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr14:69585600-69595600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:69585600-69595600	Weak transcription	Brain Anterior Caudate	brain
36	chr14:69585600-69595800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr14:69585600-69595800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:69585600-69595800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr14:69585600-69595800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:69585600-69595800	Weak transcription	Fetal Brain Female	brain
41	chr14:69585600-69596000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:69585600-69596000	Weak transcription	HSMMtube	muscle
43	chr14:69585600-69596200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:69585600-69596400	Weak transcription	Fetal Stomach	stomach
45	chr14:69585600-69600200	Weak transcription	Esophagus	oesophagus
46	chr14:69585600-69609200	Weak transcription	Fetal Kidney	kidney
47	chr14:69585800-69592200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr14:69585800-69596200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr14:69586000-69595800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:69586000-69595800	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links