Variant report

Variant	rs7157772
Chromosome Location	chr14:69641740-69641741
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69617143..69620013-chr14:69639843..69641945,2	K562	blood:
2	chr14:69618385..69620829-chr14:69640774..69643572,2	MCF-7	breast:
3	chr14:69633201..69635040-chr14:69638961..69641800,2	K562	blood:
4	chr14:69635648..69638219-chr14:69640307..69641889,2	K562	blood:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10133226	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10133341	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134554	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10139153	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10139274	0.91[CEU][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10150493	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158794	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158796	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1147468	1.00[ASN][1000 genomes]
rs1147478	0.92[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs1147479	0.92[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs11848820	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275405	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1275408	0.92[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs1275409	0.85[EUR][1000 genomes]
rs1275410	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1275411	0.92[CEU][hapmap];0.95[GIH][hapmap];0.82[EUR][1000 genomes]
rs1275412	0.82[EUR][1000 genomes]
rs1275418	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1275420	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12887465	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12888526	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1464307	0.84[CEU][hapmap]
rs1710988	0.96[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836065	0.92[CEU][hapmap];1.00[GIH][hapmap]
rs17836099	0.92[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs1890942	1.00[ASN][1000 genomes]
rs1890943	0.84[CEU][hapmap];1.00[GIH][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1890944	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1959759	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1965449	0.84[CEU][hapmap];1.00[GIH][hapmap];0.80[TSI][hapmap]
rs2014607	0.92[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs2090711	0.84[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090712	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096023	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102923	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2102924	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153531	1.00[ASN][1000 genomes]
rs2185490	1.00[ASN][1000 genomes]
rs2331953	0.92[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331954	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs2331955	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2331957	1.00[ASN][1000 genomes]
rs35632281	0.85[EUR][1000 genomes]
rs35686041	1.00[ASN][1000 genomes]
rs3742899	0.92[CEU][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4243633	0.92[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4326982	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899284	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4899289	0.91[CEU][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899292	0.84[CEU][hapmap]
rs4902699	0.92[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902702	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs4902703	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902704	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902708	1.00[ASN][1000 genomes]
rs4902712	1.00[ASN][1000 genomes]
rs61980269	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61981647	0.85[EUR][1000 genomes]
rs61981648	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981649	0.85[EUR][1000 genomes]
rs6573875	0.92[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573876	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6573877	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71102629	0.81[EUR][1000 genomes]
rs7148953	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150127	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7150195	1.00[ASN][1000 genomes]
rs7151090	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7151331	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7151827	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7158145	0.96[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159186	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004722	1.00[ASN][1000 genomes]
rs8007859	0.92[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8008401	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008878	1.00[ASN][1000 genomes]
rs8016075	1.00[ASN][1000 genomes]
rs8017744	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs897325	1.00[ASN][1000 genomes]
rs897327	1.00[ASN][1000 genomes]
rs897328	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7157772	RAD51L1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links