Variant report

Variant	rs4899292
Chromosome Location	chr14:69704052-69704053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69618405..69621160-chr14:69702714..69704911,2	MCF-7	breast:
2	chr14:69697379..69699453-chr14:69702660..69704964,2	K562	blood:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10134554	0.81[EUR][1000 genomes]
rs10139153	0.85[EUR][1000 genomes]
rs10139274	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs10150493	0.85[EUR][1000 genomes]
rs11158796	0.85[EUR][1000 genomes]
rs1147478	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147479	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848820	0.82[CEU][hapmap]
rs1275405	0.88[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275408	0.92[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275409	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275410	0.91[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275411	0.92[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275412	0.85[EUR][1000 genomes]
rs1275418	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275420	0.81[CEU][hapmap]
rs12888526	0.81[EUR][1000 genomes]
rs1464307	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836065	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs17836099	0.92[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890943	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890944	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1959759	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965449	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014607	0.92[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090711	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2090712	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2096023	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2102923	0.80[EUR][1000 genomes]
rs2102924	0.84[EUR][1000 genomes]
rs2185490	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs2331953	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2331954	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2331955	0.86[EUR][1000 genomes]
rs2331957	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs35632281	0.86[EUR][1000 genomes]
rs3742899	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs4243633	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4326982	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45469294	1.00[ASN][1000 genomes]
rs4899284	0.90[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899289	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4902699	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902702	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902703	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4902704	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61741172	1.00[ASN][1000 genomes]
rs61981647	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981649	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573875	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6573876	0.82[EUR][1000 genomes]
rs6573877	0.84[EUR][1000 genomes]
rs7150127	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151090	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7151331	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7151827	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157772	0.84[CEU][hapmap]
rs7159186	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8007859	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8008401	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8017744	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
4	chr14:69678600-69709200	Weak transcription	A549	lung
5	chr14:69688600-69707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:69692800-69708400	Weak transcription	Stomach Mucosa	stomach
7	chr14:69693800-69704600	Weak transcription	HSMMtube	muscle
8	chr14:69694000-69711200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
10	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
11	chr14:69694400-69704600	Weak transcription	Osteobl	bone
12	chr14:69695200-69708800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:69695600-69706000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:69695600-69708800	Strong transcription	Liver	Liver
15	chr14:69696400-69708800	Strong transcription	Stomach Smooth Muscle	stomach
16	chr14:69696600-69709600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:69697600-69704600	Weak transcription	Fetal Kidney	kidney
18	chr14:69698600-69706600	Weak transcription	Fetal Heart	heart
19	chr14:69698600-69709200	Strong transcription	Brain Angular Gyrus	brain
20	chr14:69698800-69707800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr14:69698800-69708000	Strong transcription	Fetal Intestine Large	intestine
22	chr14:69698800-69709200	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr14:69700200-69709400	Strong transcription	Fetal Stomach	stomach
24	chr14:69700600-69709400	Strong transcription	Fetal Muscle Leg	muscle
25	chr14:69700800-69704200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:69700800-69706000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr14:69700800-69708600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:69700800-69708600	Strong transcription	Adipose Nuclei	Adipose
29	chr14:69700800-69709000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr14:69701000-69705400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr14:69701000-69708600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:69701000-69708600	Strong transcription	Primary T cells from cord blood	blood
33	chr14:69701000-69709400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:69701000-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:69701200-69707000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr14:69701200-69708000	Strong transcription	Lung	lung
37	chr14:69701200-69708800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:69701200-69709200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:69701200-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:69701400-69705200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr14:69701400-69705600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:69701400-69705600	Strong transcription	Fetal Thymus	thymus
43	chr14:69701400-69705800	Strong transcription	Ovary	ovary
44	chr14:69701400-69706000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr14:69701400-69706000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr14:69701400-69706000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr14:69701400-69706200	Strong transcription	Brain Anterior Caudate	brain
48	chr14:69701400-69706800	Strong transcription	Left Ventricle	heart
49	chr14:69701400-69707800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:69701400-69707800	Strong transcription	Duodenum Mucosa	Duodenum

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