Variant report

Variant	rs4899284
Chromosome Location	chr14:69650845-69650846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69649327..69654053-chr14:69656065..69659968,5	K562	blood:
2	chr14:69650205..69651953-chr14:69652418..69654418,2	MCF-7	breast:
3	chr14:69626126..69627931-chr14:69649788..69652518,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCAF5-1	chr14:69650791-69651214	ENSG00000258957
2	lnc-DCAF5-1	chr14:69649737-69651214	ENSG00000258957
3	lnc-DCAF5-1	chr14:69649962-69651214	NONHSAT037510

No data

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000258957	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10133226	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10133341	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10139153	0.81[EUR][1000 genomes]
rs10139274	0.81[EUR][1000 genomes]
rs10150493	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11158794	0.80[EUR][1000 genomes]
rs11158796	0.81[EUR][1000 genomes]
rs1147478	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147479	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848820	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1275405	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275408	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275409	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275410	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275411	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275412	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1275418	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275420	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12888526	0.82[AMR][1000 genomes]
rs1464307	0.89[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1710988	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs17836065	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17836099	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890943	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890944	0.81[EUR][1000 genomes]
rs1959759	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965449	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014607	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090711	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2090712	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2096023	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2102924	0.80[AMR][1000 genomes]
rs2331953	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2331954	0.90[CEU][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35632281	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45469294	1.00[ASN][1000 genomes]
rs4899289	0.81[AMR][1000 genomes]
rs4899292	0.90[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902699	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4902702	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61741172	1.00[ASN][1000 genomes]
rs61980269	0.81[EUR][1000 genomes]
rs61981647	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981648	0.85[EUR][1000 genomes]
rs61981649	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573875	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6573876	0.80[AMR][1000 genomes]
rs6573877	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7148953	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7150127	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151090	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7151331	0.81[EUR][1000 genomes]
rs7151827	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157772	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7158145	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs8017744	0.82[CEU][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69650000-69651200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:69650000-69651400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:69650000-69651600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:69650200-69651000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:69650200-69651000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:69650200-69651200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:69650200-69651200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:69650200-69651200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr14:69650200-69651600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:69650800-69651000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr14:69650800-69651200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:69650800-69657600	Weak transcription	Monocytes-CD14+_RO01746	blood

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