Variant report

Variant	rs1147479
Chromosome Location	chr14:69609498-69609499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69606804..69609751-chr14:69611756..69613972,2	MCF-7	breast:
2	chr14:69608197..69610454-chr14:69620173..69622020,3	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10133226	0.84[EUR][1000 genomes]
rs10133341	0.85[EUR][1000 genomes]
rs10139153	0.80[EUR][1000 genomes]
rs10139274	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs10150493	0.80[EUR][1000 genomes]
rs11158796	0.80[EUR][1000 genomes]
rs1147478	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848820	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1275405	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275408	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275409	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275410	0.95[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275411	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275412	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1275418	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275420	0.88[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1464307	0.91[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1710988	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17836065	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836099	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890943	0.92[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890944	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs1959759	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965449	0.92[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014607	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090711	0.80[EUR][1000 genomes]
rs2090712	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2096023	0.83[CEU][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs2185490	0.83[CEU][hapmap]
rs2331953	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2331954	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs242097	1.00[ASW][hapmap]
rs35632281	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3742899	0.83[CEU][hapmap];0.80[TSI][hapmap]
rs4243633	0.83[CEU][hapmap]
rs45469294	1.00[ASN][1000 genomes]
rs4899284	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899289	0.82[CEU][hapmap]
rs4899292	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902699	0.83[CEU][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs4902702	0.92[CEU][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902704	0.83[CEU][hapmap]
rs61741172	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980269	0.80[EUR][1000 genomes]
rs61981647	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981648	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61981649	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573875	0.83[CEU][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs6573877	0.81[EUR][1000 genomes]
rs7148953	0.85[EUR][1000 genomes]
rs7150127	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151090	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151331	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs7151827	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157772	0.92[CEU][hapmap];1.00[GIH][hapmap];0.85[EUR][1000 genomes]
rs7158145	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7159186	0.83[CEU][hapmap]
rs761898	1.00[ASW][hapmap];0.84[TSI][hapmap]
rs8007859	0.83[CEU][hapmap]
rs8017744	0.86[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1147479	ADAM21	cis	parietal	SCAN
rs1147479	RAD51L1	cis	parietal	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69596600-69609600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:69596600-69609600	Weak transcription	Dnd41	blood
4	chr14:69596600-69612800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:69596600-69613800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:69596600-69614800	Weak transcription	Fetal Brain Female	brain
7	chr14:69596600-69614800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:69596600-69615000	Weak transcription	Thymus	Thymus
9	chr14:69596600-69615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:69596600-69615400	Weak transcription	Placenta	Placenta
11	chr14:69596600-69616400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:69596600-69617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:69597600-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:69600000-69617000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:69600200-69611400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:69600400-69611200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:69600400-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:69600400-69616800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:69600400-69616800	Weak transcription	Fetal Brain Male	brain
20	chr14:69600600-69617800	Weak transcription	Aorta	Aorta
21	chr14:69601000-69613200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr14:69601000-69615600	Weak transcription	HMEC	breast
23	chr14:69601000-69615800	Weak transcription	A549	lung
24	chr14:69601000-69616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:69601000-69617000	Weak transcription	Ovary	ovary
26	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
27	chr14:69601200-69609600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr14:69601400-69616000	Weak transcription	Hela-S3	cervix
29	chr14:69604800-69611400	Weak transcription	Brain Hippocampus Middle	brain
30	chr14:69604800-69611800	Weak transcription	Pancreas	Pancrea
31	chr14:69604800-69616800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr14:69605000-69616600	Weak transcription	Brain Germinal Matrix	brain
33	chr14:69605200-69614800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:69605200-69616800	Weak transcription	Small Intestine	intestine
35	chr14:69605200-69617400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr14:69605400-69615000	Weak transcription	HSMMtube	muscle
37	chr14:69605400-69617000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:69605400-69617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:69605400-69617600	Weak transcription	Brain Substantia Nigra	brain
40	chr14:69605600-69613800	Weak transcription	HUVEC	blood vessel
41	chr14:69605600-69614000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr14:69605600-69614000	Weak transcription	Fetal Lung	lung
43	chr14:69605600-69614000	Weak transcription	HSMM	muscle
44	chr14:69605600-69615400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr14:69605600-69615400	Weak transcription	NH-A	brain
46	chr14:69605600-69616000	Weak transcription	Fetal Heart	heart
47	chr14:69605600-69616800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr14:69605600-69617600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr14:69605600-69617800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr14:69605800-69609600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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