Variant report

Variant	rs1275418
Chromosome Location	chr14:69617936-69617937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69617775..69618630-chr14:69709107..69709873,3	MCF-7	breast:
2	chr14:69614281..69621283-chr14:69656459..69660724,14	MCF-7	breast:
3	chr14:69583942..69585536-chr14:69616276..69618691,2	MCF-7	breast:
4	chr14:69604147..69606504-chr14:69616675..69618256,2	MCF-7	breast:
5	chr14:69616886..69618539-chr14:69863511..69866374,2	K562	blood:
6	chr14:69616829..69621784-chr14:69657152..69660113,5	K562	blood:
7	chr14:69614082..69618294-chr14:69668784..69671867,3	MCF-7	breast:
8	chr14:69616886..69618828-chr14:69863511..69865491,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258957	Chromatin interaction
ENSG00000100632	Chromatin interaction
ENSG00000081177	Chromatin interaction
ENSG00000029364	Chromatin interaction
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10133226	0.84[EUR][1000 genomes]
rs10133341	0.85[EUR][1000 genomes]
rs10139153	0.80[EUR][1000 genomes]
rs10139274	0.80[EUR][1000 genomes]
rs10150493	0.80[EUR][1000 genomes]
rs11158796	0.80[EUR][1000 genomes]
rs1147478	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147479	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848820	0.84[EUR][1000 genomes]
rs1275405	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275408	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275409	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275410	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275411	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275412	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1275420	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1464307	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1710988	0.88[EUR][1000 genomes]
rs17836065	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836099	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890943	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890944	0.80[EUR][1000 genomes]
rs1959759	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965449	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014607	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090711	0.80[EUR][1000 genomes]
rs2090712	0.80[EUR][1000 genomes]
rs2096023	0.80[EUR][1000 genomes]
rs2331953	0.80[EUR][1000 genomes]
rs2331954	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35632281	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs45469294	1.00[ASN][1000 genomes]
rs4899284	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899292	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902699	0.81[EUR][1000 genomes]
rs4902702	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61741172	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980269	0.80[EUR][1000 genomes]
rs61981647	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981648	0.88[EUR][1000 genomes]
rs61981649	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573875	0.81[EUR][1000 genomes]
rs6573877	0.81[EUR][1000 genomes]
rs7148953	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7150127	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151090	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151331	0.80[EUR][1000 genomes]
rs7151827	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157772	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7158145	0.88[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
3	chr14:69606600-69618000	Weak transcription	Lung	lung
4	chr14:69612000-69618000	Weak transcription	Gastric	stomach
5	chr14:69614000-69618000	Weak transcription	Colonic Mucosa	Colon
6	chr14:69615000-69618000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:69616400-69621600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:69616600-69618000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:69616800-69618000	Enhancers	Duodenum Mucosa	Duodenum
10	chr14:69616800-69618000	Enhancers	Psoas Muscle	Psoas
11	chr14:69616800-69618000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr14:69616800-69618000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:69616800-69618000	Enhancers	Small Intestine	intestine
14	chr14:69616800-69618400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:69617000-69618000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:69617200-69618000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:69617400-69618000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:69617400-69618000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr14:69617400-69618000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr14:69617400-69618200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:69617400-69618200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:69617400-69618200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr14:69617400-69618200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:69617400-69618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:69617400-69618200	Flanking Active TSS	Fetal Lung	lung
26	chr14:69617400-69618200	Flanking Active TSS	Dnd41	blood
27	chr14:69617400-69618200	Flanking Active TSS	Hela-S3	cervix
28	chr14:69617400-69618200	Flanking Active TSS	NHLF	lung
29	chr14:69617400-69620200	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr14:69617400-69620600	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr14:69617600-69618000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:69617600-69618000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr14:69617600-69618000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr14:69617600-69618000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:69617600-69618000	Enhancers	Liver	Liver
36	chr14:69617600-69618000	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr14:69617600-69618000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:69617600-69618000	Active TSS	Fetal Brain Male	brain
39	chr14:69617600-69618000	Weak transcription	Left Ventricle	heart
40	chr14:69617600-69618000	Flanking Active TSS	A549	lung
41	chr14:69617600-69618000	Flanking Active TSS	HepG2	liver
42	chr14:69617600-69618200	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr14:69617600-69618200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr14:69617600-69618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:69617600-69618200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr14:69617600-69618200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr14:69617600-69618200	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr14:69617600-69618200	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr14:69617600-69618200	Weak transcription	Spleen	Spleen
50	chr14:69617600-69618200	Flanking Active TSS	HUVEC	blood vessel

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