Variant report

Variant	rs35632281
Chromosome Location	chr14:69570462-69570463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69570211..69571796-chr14:69576247..69578474,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10133226	0.84[EUR][1000 genomes]
rs10133341	0.85[EUR][1000 genomes]
rs1147478	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1147479	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11848820	0.84[EUR][1000 genomes]
rs1275405	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275408	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275409	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275410	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275411	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1275412	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1275418	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1275420	0.88[EUR][1000 genomes]
rs1464307	0.86[EUR][1000 genomes]
rs1710988	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17836065	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17836099	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1890943	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1959759	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1965449	0.89[EUR][1000 genomes]
rs2014607	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2331954	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4899284	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4899292	0.86[EUR][1000 genomes]
rs4902699	0.81[EUR][1000 genomes]
rs4902702	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61741172	0.84[EUR][1000 genomes]
rs61980269	0.80[EUR][1000 genomes]
rs61981647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61981648	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61981649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573875	0.81[EUR][1000 genomes]
rs6573877	0.81[EUR][1000 genomes]
rs71102629	0.80[AMR][1000 genomes]
rs7148953	0.84[EUR][1000 genomes]
rs7150127	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7151090	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151827	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7157772	0.85[EUR][1000 genomes]
rs7158145	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
2	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
3	chr14:69558600-69572000	Weak transcription	Brain Germinal Matrix	brain
4	chr14:69558600-69578600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:69558800-69572000	Weak transcription	Esophagus	oesophagus
6	chr14:69558800-69572000	Weak transcription	Spleen	Spleen
7	chr14:69558800-69581600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:69558800-69582000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
10	chr14:69559000-69583800	Weak transcription	Colonic Mucosa	Colon
11	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:69560600-69575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:69561200-69572000	Weak transcription	Gastric	stomach
14	chr14:69561200-69577200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:69561200-69581600	Weak transcription	Aorta	Aorta
16	chr14:69561200-69581600	Weak transcription	Lung	lung
17	chr14:69561200-69581600	Weak transcription	Pancreas	Pancrea
18	chr14:69561200-69581600	Weak transcription	Small Intestine	intestine
19	chr14:69561400-69581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:69561600-69572000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:69561600-69581600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:69561600-69581600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:69561800-69572000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:69561800-69572000	Weak transcription	Left Ventricle	heart
25	chr14:69561800-69581600	Weak transcription	Fetal Heart	heart
26	chr14:69562000-69582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:69562600-69571600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:69563400-69572000	Weak transcription	Dnd41	blood
29	chr14:69563400-69584600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:69563600-69581400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:69563800-69572000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr14:69563800-69574800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:69564000-69581400	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:69564000-69581800	Weak transcription	Brain Substantia Nigra	brain
35	chr14:69564000-69584600	Weak transcription	Fetal Brain Male	brain
36	chr14:69565000-69572000	Weak transcription	Fetal Stomach	stomach
37	chr14:69565000-69572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:69565000-69584400	Weak transcription	Right Ventricle	heart
39	chr14:69565200-69572000	Weak transcription	Fetal Intestine Large	intestine
40	chr14:69565200-69572000	Weak transcription	Thymus	Thymus
41	chr14:69565200-69572000	Weak transcription	HSMMtube	muscle
42	chr14:69565200-69573800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:69565200-69574600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:69565200-69580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:69565200-69581200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:69565200-69582800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr14:69565200-69583800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr14:69565200-69584000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr14:69565400-69582000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links