Variant report

Variant	rs761898
Chromosome Location	chr14:69480381-69480382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69444426..69446976-chr14:69479738..69482578,2	MCF-7	breast:
2	chr14:69479524..69481423-chr14:69483176..69484948,2	K562	blood:
3	chr14:69444869..69447830-chr14:69479738..69482436,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1147478	0.84[TSI][hapmap]
rs1147479	1.00[ASW][hapmap];0.84[TSI][hapmap]
rs1275194	0.80[CEU][hapmap];1.00[MEX][hapmap]
rs1275408	0.84[TSI][hapmap]
rs1275411	0.84[TSI][hapmap]
rs17836065	0.84[TSI][hapmap]
rs17836099	0.84[TSI][hapmap]
rs1890943	0.82[TSI][hapmap]
rs2014607	1.00[ASW][hapmap];0.84[TSI][hapmap]
rs242091	0.81[EUR][1000 genomes]
rs242093	0.81[TSI][hapmap]
rs242095	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs242097	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[MEX][hapmap]
rs242100	1.00[MEX][hapmap]
rs242102	0.80[CEU][hapmap];1.00[MEX][hapmap]
rs242109	0.82[MEX][hapmap]
rs440712	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902683	0.82[MEX][hapmap]
rs743128	1.00[ASN][1000 genomes]
rs761900	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs761898	RAD51L1	cis	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69472400-69480400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:69472800-69480800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:69472800-69481000	Weak transcription	Esophagus	oesophagus
4	chr14:69473000-69480600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:69473000-69480600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:69473000-69480600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:69473000-69482600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
9	chr14:69473200-69480400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:69473200-69480400	Weak transcription	HUVEC	blood vessel
11	chr14:69473200-69480800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:69473400-69481600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:69474000-69480400	Weak transcription	HepG2	liver
14	chr14:69475600-69480400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:69475600-69480600	Weak transcription	Stomach Mucosa	stomach
16	chr14:69475800-69480400	Weak transcription	Fetal Lung	lung
17	chr14:69475800-69480600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:69475800-69480600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:69475800-69481000	Weak transcription	NH-A	brain
20	chr14:69476000-69480400	Weak transcription	Placenta	Placenta
21	chr14:69477600-69480600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:69477600-69480600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:69477800-69480400	Weak transcription	A549	lung
24	chr14:69477800-69480800	Weak transcription	Hela-S3	cervix
25	chr14:69478400-69482000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr14:69479000-69482000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:69479200-69481200	Enhancers	Fetal Muscle Leg	muscle
28	chr14:69479200-69481800	Enhancers	Primary B cells from cord blood	blood
29	chr14:69479400-69481400	Enhancers	Fetal Muscle Trunk	muscle
30	chr14:69479400-69482000	Enhancers	Fetal Intestine Small	intestine
31	chr14:69479600-69481400	Enhancers	Fetal Stomach	stomach
32	chr14:69479600-69482000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:69479600-69482000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:69479600-69482000	Enhancers	Lung	lung
35	chr14:69479800-69480800	Weak transcription	NHLF	lung
36	chr14:69479800-69480800	Weak transcription	Osteobl	bone
37	chr14:69480000-69480400	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr14:69480000-69480600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:69480200-69481400	Enhancers	Primary hematopoietic stem cells	blood
40	chr14:69480200-69481400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr14:69480200-69482000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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