Variant report

Variant	rs12887465
Chromosome Location	chr14:69661809-69661810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69655363..69656956-chr14:69660370..69661977,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10133226	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10133341	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10134554	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10139153	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10139274	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10150493	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158794	0.88[EUR][1000 genomes]
rs11158796	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11848820	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1275420	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12888526	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1710988	0.83[EUR][1000 genomes]
rs1890943	0.81[EUR][1000 genomes]
rs1890944	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2090711	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2090712	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2096023	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2102923	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2102924	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2331953	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2331955	0.86[EUR][1000 genomes]
rs3742899	0.87[EUR][1000 genomes]
rs4243633	0.85[EUR][1000 genomes]
rs4326982	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4899289	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902699	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4902703	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4902704	0.84[EUR][1000 genomes]
rs61980269	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61981648	0.83[EUR][1000 genomes]
rs6573875	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6573876	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6573877	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7148953	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7151331	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7157772	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7158145	0.83[EUR][1000 genomes]
rs7159186	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8007859	0.85[EUR][1000 genomes]
rs8008401	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8017744	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12887465	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69662600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:69658800-69673200	Weak transcription	Spleen	Spleen
3	chr14:69658800-69695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:69658800-69702400	Weak transcription	Gastric	stomach
5	chr14:69659000-69663800	Weak transcription	Small Intestine	intestine
6	chr14:69659000-69664200	Weak transcription	Psoas Muscle	Psoas
7	chr14:69659000-69672800	Weak transcription	Esophagus	oesophagus
8	chr14:69659000-69676200	Weak transcription	Left Ventricle	heart
9	chr14:69659000-69677000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:69659000-69679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:69659000-69695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:69659000-69695400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
14	chr14:69659200-69672800	Weak transcription	Fetal Stomach	stomach
15	chr14:69659200-69673200	Weak transcription	Ovary	ovary
16	chr14:69659200-69676200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:69659200-69676400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:69659200-69679200	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:69659200-69679400	Weak transcription	Aorta	Aorta
20	chr14:69659200-69695600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
22	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
23	chr14:69659400-69662800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:69659400-69666600	Weak transcription	Fetal Kidney	kidney
25	chr14:69659400-69666800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr14:69659400-69667600	Weak transcription	NH-A	brain
27	chr14:69659400-69670600	Weak transcription	Brain Germinal Matrix	brain
28	chr14:69659400-69675000	Weak transcription	Fetal Intestine Large	intestine
29	chr14:69659400-69676000	Weak transcription	Brain Anterior Caudate	brain
30	chr14:69659400-69676600	Weak transcription	Adipose Nuclei	Adipose
31	chr14:69659400-69678600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr14:69659400-69679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:69659400-69695600	Weak transcription	HSMM	muscle
34	chr14:69659600-69662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:69659600-69662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:69659600-69671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:69659600-69673000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:69659600-69676200	Weak transcription	Brain Hippocampus Middle	brain
39	chr14:69659600-69676200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr14:69659600-69676400	Weak transcription	Fetal Heart	heart
41	chr14:69659600-69676600	Weak transcription	Fetal Lung	lung
42	chr14:69659600-69679400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69659600-69695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:69659600-69695400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr14:69659800-69671000	Weak transcription	NHEK	skin
46	chr14:69659800-69671400	Weak transcription	HMEC	breast
47	chr14:69659800-69672800	Weak transcription	Fetal Intestine Small	intestine
48	chr14:69659800-69675200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:69659800-69675200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr14:69659800-69676200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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