Variant report

Variant	rs3173
Chromosome Location	chr14:69709373-69709374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69615656..69619747-chr14:69707327..69710862,3	MCF-7	breast:
2	chr14:69708253..69709757-chr14:69862792..69865498,2	MCF-7	breast:
3	chr14:69708308..69710896-chr14:69926995..69929013,2	MCF-7	breast:
4	chr14:69595674..69596605-chr14:69708937..69709689,2	MCF-7	breast:
5	chr14:69709053..69710185-chr14:69829524..69830405,6	MCF-7	breast:
6	chr14:69617775..69618630-chr14:69709107..69709873,3	MCF-7	breast:
7	chr14:69709010..69710084-chr14:69753996..69754976,4	MCF-7	breast:
8	chr14:69708990..69709961-chr14:69926423..69927285,4	MCF-7	breast:
9	chr14:69707955..69709727-chr14:69863993..69866983,2	K562	blood:
10	chr14:69596019..69596748-chr14:69708816..69709555,3	MCF-7	breast:
11	chr14:69708985..69710051-chr14:69926386..69927467,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction
ENSG00000139990	Chromatin interaction

rs_ID	r²[population]
rs1013762	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs10140798	0.83[AMR][1000 genomes]
rs10148349	1.00[CHB][hapmap]
rs1043254	1.00[CHB][hapmap]
rs11158784	0.83[CEU][hapmap]
rs11158785	0.83[CEU][hapmap]
rs11620883	1.00[JPT][hapmap]
rs11623999	1.00[JPT][hapmap]
rs11628126	0.83[CEU][hapmap]
rs1275417	0.83[CEU][hapmap]
rs1710990	1.00[CHB][hapmap]
rs4389087	1.00[JPT][hapmap]
rs4902695	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs8004546	1.00[CHB][hapmap]
rs9323521	0.83[CEU][hapmap]

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:69694000-69711200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
5	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
6	chr14:69696600-69709600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:69700200-69709400	Strong transcription	Fetal Stomach	stomach
8	chr14:69700600-69709400	Strong transcription	Fetal Muscle Leg	muscle
9	chr14:69701000-69709400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:69701000-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:69701200-69709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:69701400-69709400	Strong transcription	Esophagus	oesophagus
13	chr14:69701600-69714000	Weak transcription	HSMM	muscle
14	chr14:69703400-69711000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr14:69703400-69719600	Weak transcription	HMEC	breast
16	chr14:69704800-69713200	Weak transcription	NHEK	skin
17	chr14:69704800-69714600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:69704800-69716600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:69705000-69709800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:69705000-69711800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:69705000-69713800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:69705200-69709800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:69705200-69710800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:69705200-69711800	Weak transcription	Fetal Kidney	kidney
26	chr14:69705200-69716200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr14:69705400-69711600	Weak transcription	Primary B cells from cord blood	blood
28	chr14:69705600-69710200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:69705600-69714600	Weak transcription	Fetal Thymus	thymus
30	chr14:69706000-69709600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr14:69706000-69709600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr14:69706000-69709600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:69706000-69710800	Weak transcription	GM12878-XiMat	blood
34	chr14:69706000-69712000	Weak transcription	HepG2	liver
35	chr14:69706000-69716200	Weak transcription	HSMMtube	muscle
36	chr14:69706000-69722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:69706200-69713800	Weak transcription	Osteobl	bone
38	chr14:69706200-69716600	Weak transcription	Brain Substantia Nigra	brain
39	chr14:69707000-69709400	Strong transcription	Brain Anterior Caudate	brain
40	chr14:69707200-69709400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:69707200-69715000	Weak transcription	Fetal Brain Male	brain
42	chr14:69707200-69716400	Weak transcription	Psoas Muscle	Psoas
43	chr14:69707400-69709600	Weak transcription	Placenta	Placenta
44	chr14:69707800-69709400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:69707800-69709400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr14:69707800-69709400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:69707800-69714000	Weak transcription	Fetal Lung	lung
48	chr14:69707800-69717000	Weak transcription	Right Ventricle	heart
49	chr14:69707800-69717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr14:69707800-69717400	Weak transcription	Colonic Mucosa	Colon

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