Variant report

Variant	rs8004546
Chromosome Location	chr14:69682787-69682788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69674458..69677089-chr14:69681340..69683012,2	MCF-7	breast:
2	chr14:69667835..69669393-chr14:69682673..69685146,2	K562	blood:

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction

rs_ID	r²[population]
rs1013762	1.00[CHB][hapmap]
rs10148349	1.00[CHB][hapmap]
rs1043254	1.00[CHB][hapmap]
rs1275207	0.82[LWK][hapmap]
rs1275419	1.00[CHD][hapmap]
rs1710990	1.00[CHB][hapmap]
rs1710993	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3173	1.00[CHB][hapmap]
rs4902695	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4902697	1.00[ASN][1000 genomes]
rs59946997	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573870	0.90[EUR][1000 genomes]
rs66870630	1.00[ASN][1000 genomes]
rs7141235	1.00[TSI][hapmap]
rs73280851	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:69658800-69702400	Weak transcription	Gastric	stomach
3	chr14:69659000-69695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:69659000-69695400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
6	chr14:69659200-69695600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
8	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
9	chr14:69659400-69695600	Weak transcription	HSMM	muscle
10	chr14:69659600-69695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:69659600-69695400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:69659800-69695600	Weak transcription	Lung	lung
13	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
14	chr14:69660800-69683400	Weak transcription	HepG2	liver
15	chr14:69660800-69695400	Weak transcription	Thymus	Thymus
16	chr14:69663400-69696000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:69664400-69693200	Weak transcription	Psoas Muscle	Psoas
18	chr14:69664400-69701400	Weak transcription	Small Intestine	intestine
19	chr14:69670600-69698000	Weak transcription	Fetal Thymus	thymus
20	chr14:69671800-69685200	Weak transcription	Brain Germinal Matrix	brain
21	chr14:69671800-69693000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:69673200-69690600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:69673200-69701600	Weak transcription	HMEC	breast
24	chr14:69673400-69690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:69673400-69696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:69673600-69695400	Weak transcription	Ovary	ovary
27	chr14:69673600-69701400	Weak transcription	Esophagus	oesophagus
28	chr14:69674400-69696000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:69674600-69689800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr14:69674600-69690200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr14:69674800-69696400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr14:69674800-69702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:69675200-69689200	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:69675200-69695400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr14:69675200-69701400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:69675200-69702800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:69675800-69690400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr14:69675800-69701400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr14:69676200-69693000	Weak transcription	NH-A	brain
40	chr14:69676200-69703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:69676600-69695400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr14:69676800-69690600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr14:69676800-69698800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr14:69677000-69689000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:69677000-69692800	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:69677000-69695600	Weak transcription	Brain Angular Gyrus	brain
47	chr14:69677000-69701400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr14:69677200-69689200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:69677200-69690200	Weak transcription	Liver	Liver

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