Variant report

Variant	rs11620883
Chromosome Location	chr14:69721780-69721781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69720657..69723406-chr14:69725770..69728207,2	K562	blood:
2	chr14:69720076..69722559-chr14:69822737..69824435,2	MCF-7	breast:
3	chr14:69720688..69723448-chr14:69723553..69727134,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258520	Chromatin interaction
ENSG00000100626	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11621144	1.00[ASN][1000 genomes]
rs11621833	1.00[CEU][hapmap]
rs11623999	1.00[JPT][hapmap]
rs11626985	1.00[CEU][hapmap]
rs11627004	0.88[CEU][hapmap]
rs11627476	0.88[CEU][hapmap]
rs2176255	0.88[CEU][hapmap]
rs2877537	1.00[ASN][1000 genomes]
rs3173	1.00[JPT][hapmap]
rs3742905	0.88[CEU][hapmap]
rs4389087	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45577339	0.82[EUR][1000 genomes]
rs55714609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55836617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017572	1.00[ASN][1000 genomes]
rs56270411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59186728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66471927	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144704	0.88[CEU][hapmap]
rs72720275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720288	0.93[EUR][1000 genomes]
rs72720290	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008141	0.88[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
2	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69706000-69722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:69708400-69721800	Weak transcription	Fetal Brain Female	brain
5	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
6	chr14:69708600-69722000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:69708800-69723000	Weak transcription	Fetal Intestine Small	intestine
8	chr14:69709200-69722800	Weak transcription	Brain Germinal Matrix	brain
9	chr14:69709400-69722600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:69709400-69726400	Weak transcription	Gastric	stomach
12	chr14:69709800-69725400	Weak transcription	Brain Angular Gyrus	brain
13	chr14:69714800-69726200	Weak transcription	Aorta	Aorta
14	chr14:69716600-69724600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:69716800-69722000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:69717000-69725200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:69717400-69722600	Weak transcription	Right Ventricle	heart
18	chr14:69717400-69723400	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:69717400-69725800	Weak transcription	Left Ventricle	heart
20	chr14:69718400-69722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:69718400-69722000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr14:69721200-69722800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:69721400-69722200	Enhancers	HUVEC	blood vessel
24	chr14:69721600-69722600	Enhancers	Fetal Muscle Trunk	muscle

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