Variant report

Variant	rs45577339
Chromosome Location	chr14:69702097-69702098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69694022..69696268-chr14:69699300..69702287,2	MCF-7	breast:
2	chr14:69618421..69622920-chr14:69696424..69702104,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11620883	0.82[EUR][1000 genomes]
rs11623999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11627004	0.86[ASN][1000 genomes]
rs11627476	0.86[ASN][1000 genomes]
rs12147222	0.86[ASN][1000 genomes]
rs2176255	0.86[ASN][1000 genomes]
rs3742905	0.86[ASN][1000 genomes]
rs4389087	0.82[EUR][1000 genomes]
rs55714609	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836617	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56270411	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58761612	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59186728	0.82[EUR][1000 genomes]
rs66471927	1.00[EUR][1000 genomes]
rs7144704	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718263	1.00[AFR][1000 genomes]
rs72718270	1.00[AFR][1000 genomes]
rs72718279	1.00[AFR][1000 genomes]
rs72720212	0.86[ASN][1000 genomes]
rs72720218	0.86[ASN][1000 genomes]
rs72720275	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720276	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720277	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720278	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720280	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72720285	0.82[EUR][1000 genomes]
rs72720290	1.00[AFR][1000 genomes]
rs72720298	1.00[ASN][1000 genomes]
rs8008141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69702400	Weak transcription	Gastric	stomach
2	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
3	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
4	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
5	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
6	chr14:69674800-69702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:69675200-69702800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:69676200-69703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:69677000-69709600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:69677200-69702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:69678400-69702200	Weak transcription	Fetal Brain Male	brain
12	chr14:69678400-69709200	Weak transcription	NHDF-Ad	bronchial
13	chr14:69678600-69703000	Weak transcription	NHEK	skin
14	chr14:69678600-69709200	Weak transcription	A549	lung
15	chr14:69680000-69702800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:69681200-69702800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr14:69688600-69707400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:69689000-69702800	Weak transcription	HepG2	liver
19	chr14:69689600-69703200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:69690200-69703000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:69690600-69703000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:69691400-69702800	Weak transcription	Spleen	Spleen
23	chr14:69692200-69702800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:69692800-69708400	Weak transcription	Stomach Mucosa	stomach
25	chr14:69693400-69703000	Weak transcription	Psoas Muscle	Psoas
26	chr14:69693800-69704600	Weak transcription	HSMMtube	muscle
27	chr14:69694000-69702800	Weak transcription	Right Ventricle	heart
28	chr14:69694000-69711200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
30	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
31	chr14:69694400-69704600	Weak transcription	Osteobl	bone
32	chr14:69695200-69708800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:69695600-69706000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr14:69695600-69708800	Strong transcription	Liver	Liver
35	chr14:69695800-69703000	Weak transcription	NHLF	lung
36	chr14:69696000-69703200	Weak transcription	Dnd41	blood
37	chr14:69696400-69708800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr14:69696600-69709600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr14:69697200-69702800	Weak transcription	GM12878-XiMat	blood
40	chr14:69697400-69702600	Weak transcription	Brain Substantia Nigra	brain
41	chr14:69697600-69702600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:69697600-69702800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:69697600-69704000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr14:69697600-69704600	Weak transcription	Fetal Kidney	kidney
45	chr14:69698600-69706600	Weak transcription	Fetal Heart	heart
46	chr14:69698600-69709200	Strong transcription	Brain Angular Gyrus	brain
47	chr14:69698800-69707800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:69698800-69708000	Strong transcription	Fetal Intestine Large	intestine
49	chr14:69698800-69709200	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr14:69699400-69702600	Weak transcription	Aorta	Aorta

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