Variant report

Variant	rs11627004
Chromosome Location	chr14:69601087-69601088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69600065..69602228-chr14:69618165..69619916,2	K562	blood:
2	chr14:69600414..69601969-chr14:69620394..69622104,2	K562	blood:
3	chr14:69599939..69602608-chr14:69605018..69606682,2	K562	blood:
4	chr14:69598682..69601303-chr14:69622561..69624066,2	K562	blood:
5	chr14:69600850..69603375-chr14:69604696..69609142,5	K562	blood:
6	chr14:69588946..69590991-chr14:69599196..69601563,2	MCF-7	breast:
7	chr14:69599750..69603051-chr14:69617195..69620268,4	MCF-7	breast:
8	chr14:69599088..69601551-chr14:69657133..69659821,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000139990	Chromatin interaction
ENSG00000258957	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013762	1.00[JPT][hapmap]
rs10498527	1.00[JPT][hapmap]
rs1105625	1.00[JPT][hapmap]
rs11158784	1.00[JPT][hapmap]
rs11158785	1.00[JPT][hapmap]
rs11158786	1.00[JPT][hapmap]
rs11620883	0.88[CEU][hapmap]
rs11621833	0.88[CEU][hapmap]
rs11623999	0.88[CEU][hapmap]
rs11626985	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11627476	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275417	1.00[JPT][hapmap]
rs1710989	1.00[JPT][hapmap]
rs1710990	1.00[JPT][hapmap]
rs1884631	0.83[ASN][1000 genomes]
rs1914004	1.00[JPT][hapmap]
rs1950712	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2001355	1.00[JPT][hapmap]
rs2176255	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331918	1.00[JPT][hapmap]
rs2877521	0.83[ASN][1000 genomes]
rs2877522	0.83[ASN][1000 genomes]
rs2877523	0.83[ASN][1000 genomes]
rs3742905	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389087	0.88[CEU][hapmap]
rs45577339	0.86[ASN][1000 genomes]
rs4899280	1.00[JPT][hapmap]
rs4902695	1.00[JPT][hapmap]
rs55714609	0.86[ASN][1000 genomes]
rs55836617	0.86[ASN][1000 genomes]
rs55975366	0.93[EUR][1000 genomes]
rs56097892	0.93[EUR][1000 genomes]
rs56270411	0.86[ASN][1000 genomes]
rs56274826	1.00[EUR][1000 genomes]
rs56868917	1.00[EUR][1000 genomes]
rs58761612	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144704	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72718286	0.93[EUR][1000 genomes]
rs72718291	0.93[EUR][1000 genomes]
rs72718292	0.93[EUR][1000 genomes]
rs72720212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720225	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720241	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720275	0.86[ASN][1000 genomes]
rs72720276	0.86[ASN][1000 genomes]
rs72720277	0.86[ASN][1000 genomes]
rs72720278	0.86[ASN][1000 genomes]
rs72720298	0.86[ASN][1000 genomes]
rs8008141	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9323521	1.00[JPT][hapmap]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
3	chr14:69585200-69605800	Weak transcription	Lung	lung
4	chr14:69585600-69609200	Weak transcription	Fetal Kidney	kidney
5	chr14:69595400-69605400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr14:69595600-69602000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:69595600-69602400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr14:69595800-69601200	Enhancers	Colon Smooth Muscle	Colon
9	chr14:69595800-69602600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:69596400-69605200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:69596600-69603200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:69596600-69604200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:69596600-69604200	Weak transcription	Fetal Stomach	stomach
14	chr14:69596600-69604200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:69596600-69604600	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:69596600-69604800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:69596600-69605000	Weak transcription	Fetal Intestine Large	intestine
18	chr14:69596600-69605600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:69596600-69605600	Weak transcription	Fetal Intestine Small	intestine
20	chr14:69596600-69605600	Weak transcription	Fetal Thymus	thymus
21	chr14:69596600-69609600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr14:69596600-69609600	Weak transcription	Dnd41	blood
23	chr14:69596600-69612800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:69596600-69613800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:69596600-69614800	Weak transcription	Fetal Brain Female	brain
26	chr14:69596600-69614800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr14:69596600-69615000	Weak transcription	Thymus	Thymus
28	chr14:69596600-69615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:69596600-69615400	Weak transcription	Placenta	Placenta
30	chr14:69596600-69616400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr14:69596600-69617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:69596800-69601400	Weak transcription	Primary B cells from cord blood	blood
33	chr14:69596800-69603800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:69596800-69604000	Weak transcription	Brain Angular Gyrus	brain
35	chr14:69596800-69609200	Weak transcription	HepG2	liver
36	chr14:69597600-69614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:69597800-69604000	Weak transcription	GM12878-XiMat	blood
38	chr14:69598400-69604200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:69598800-69601200	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr14:69598800-69604000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:69598800-69604200	Weak transcription	Psoas Muscle	Psoas
42	chr14:69599200-69601200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:69599400-69601600	Enhancers	Fetal Lung	lung
44	chr14:69599600-69601200	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr14:69599600-69601200	Enhancers	Liver	Liver
46	chr14:69599600-69602000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr14:69599800-69601600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr14:69599800-69602600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr14:69599800-69604400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr14:69600000-69617000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links