Variant report

Variant	rs56097892
Chromosome Location	chr14:69553323-69553324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69444633..69447006-chr14:69552248..69554665,3	MCF-7	breast:
2	chr14:69548253..69551559-chr14:69552320..69554344,3	MCF-7	breast:
3	chr14:69525287..69527543-chr14:69551601..69554143,2	K562	blood:
4	chr14:69444534..69446893-chr14:69551925..69555091,4	MCF-7	breast:
5	chr14:69258210..69261150-chr14:69551788..69553676,2	K562	blood:
6	chr14:69259378..69261150-chr14:69551788..69554130,2	K562	blood:

Variant related genes	Relation type
ENSG00000259165	Chromatin interaction
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11626985	0.93[EUR][1000 genomes]
rs11627004	0.93[EUR][1000 genomes]
rs11627476	0.93[EUR][1000 genomes]
rs12147222	0.93[EUR][1000 genomes]
rs1884631	0.83[ASN][1000 genomes]
rs1950712	0.83[ASN][1000 genomes]
rs2176255	0.93[EUR][1000 genomes]
rs2877521	0.83[ASN][1000 genomes]
rs2877522	0.83[ASN][1000 genomes]
rs2877523	0.83[ASN][1000 genomes]
rs3742905	0.93[EUR][1000 genomes]
rs55975366	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56274826	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56868917	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720212	0.93[EUR][1000 genomes]
rs72720218	0.93[EUR][1000 genomes]
rs72720225	0.93[EUR][1000 genomes]
rs72720241	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
2	chr14:69522400-69556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:69523600-69553400	Weak transcription	Brain Angular Gyrus	brain
5	chr14:69523600-69556400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:69524000-69557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:69524800-69556600	Weak transcription	Fetal Brain Male	brain
8	chr14:69527000-69558200	Weak transcription	Esophagus	oesophagus
9	chr14:69528600-69560200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:69535600-69565200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr14:69536200-69556400	Weak transcription	K562	blood
12	chr14:69540400-69560600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:69541000-69556200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:69541000-69556400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:69541400-69553600	Weak transcription	Brain Substantia Nigra	brain
16	chr14:69541400-69559800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:69541600-69556400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:69541800-69553800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:69542000-69554600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
21	chr14:69543000-69559000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:69545800-69559000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr14:69546000-69553400	Weak transcription	Aorta	Aorta
24	chr14:69546000-69563200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:69546200-69556400	Weak transcription	Gastric	stomach
26	chr14:69546200-69556400	Weak transcription	Right Ventricle	heart
27	chr14:69546200-69559000	Strong transcription	GM12878-XiMat	blood
28	chr14:69546200-69559200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
30	chr14:69546400-69553400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:69546400-69557600	Weak transcription	Pancreas	Pancrea
32	chr14:69546400-69558600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:69546600-69558800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr14:69546800-69554800	Weak transcription	Fetal Kidney	kidney
35	chr14:69546800-69558000	Weak transcription	Small Intestine	intestine
36	chr14:69547000-69555400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:69547200-69555600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:69547200-69557800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:69547200-69560400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:69547600-69559200	Strong transcription	Fetal Muscle Leg	muscle
41	chr14:69547600-69559400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:69547800-69558800	Strong transcription	Left Ventricle	heart
43	chr14:69548000-69553400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr14:69548000-69558600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr14:69548000-69558800	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr14:69548000-69560200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:69548000-69563000	Strong transcription	Fetal Thymus	thymus
48	chr14:69548000-69563600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:69548200-69553800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr14:69548200-69554000	Strong transcription	Dnd41	blood

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