Variant report

Variant	rs3742905
Chromosome Location	chr14:69584646-69584647
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1013762	1.00[JPT][hapmap]
rs10498527	1.00[JPT][hapmap]
rs1105625	1.00[JPT][hapmap]
rs11158784	1.00[JPT][hapmap]
rs11158785	1.00[JPT][hapmap]
rs11158786	1.00[JPT][hapmap]
rs11620883	0.88[CEU][hapmap]
rs11623999	0.88[CEU][hapmap]
rs11626985	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11627004	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627476	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275417	1.00[JPT][hapmap]
rs1710989	1.00[JPT][hapmap]
rs1710990	1.00[JPT][hapmap]
rs1884631	0.83[ASN][1000 genomes]
rs1914004	1.00[JPT][hapmap]
rs1950712	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2001355	1.00[JPT][hapmap]
rs2176255	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331918	1.00[JPT][hapmap]
rs2877521	0.83[ASN][1000 genomes]
rs2877522	0.83[ASN][1000 genomes]
rs2877523	0.83[ASN][1000 genomes]
rs4389087	0.88[CEU][hapmap]
rs45577339	0.86[ASN][1000 genomes]
rs4899280	1.00[JPT][hapmap]
rs4902695	1.00[JPT][hapmap]
rs55714609	0.86[ASN][1000 genomes]
rs55836617	0.86[ASN][1000 genomes]
rs55975366	0.93[EUR][1000 genomes]
rs56097892	0.93[EUR][1000 genomes]
rs56270411	0.86[ASN][1000 genomes]
rs56274826	1.00[EUR][1000 genomes]
rs56868917	1.00[EUR][1000 genomes]
rs58761612	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144704	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72718286	0.93[EUR][1000 genomes]
rs72718291	0.93[EUR][1000 genomes]
rs72718292	0.93[EUR][1000 genomes]
rs72720212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720225	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720241	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720275	0.86[ASN][1000 genomes]
rs72720276	0.86[ASN][1000 genomes]
rs72720277	0.86[ASN][1000 genomes]
rs72720278	0.86[ASN][1000 genomes]
rs72720298	0.86[ASN][1000 genomes]
rs8008141	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9323521	1.00[JPT][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
2	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:69568600-69586000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:69568600-69596000	Weak transcription	K562	blood
6	chr14:69568800-69595600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:69569600-69585600	Strong transcription	Liver	Liver
8	chr14:69569600-69589200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr14:69573600-69585400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr14:69573800-69589200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr14:69574200-69589200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:69574600-69589200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:69574800-69588600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:69575000-69588400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:69575200-69589200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr14:69576200-69588600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:69576800-69586600	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:69577200-69589000	Strong transcription	Fetal Muscle Leg	muscle
19	chr14:69577400-69588600	Strong transcription	Fetal Intestine Large	intestine
20	chr14:69577600-69586400	Strong transcription	GM12878-XiMat	blood
21	chr14:69578000-69588400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr14:69578200-69585600	Strong transcription	Adipose Nuclei	Adipose
23	chr14:69578200-69585600	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr14:69578600-69588400	Weak transcription	Ovary	ovary
25	chr14:69578800-69585000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:69579200-69586400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:69579200-69588800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:69579200-69589000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:69579600-69586600	Strong transcription	HSMM	muscle
30	chr14:69579600-69588600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:69580200-69585200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr14:69580200-69588200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:69580200-69588600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:69580400-69585600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:69580400-69585600	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr14:69580600-69585200	Strong transcription	Colon Smooth Muscle	Colon
37	chr14:69580800-69585600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:69580800-69586000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:69580800-69588000	Strong transcription	Placenta	Placenta
40	chr14:69580800-69588400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:69581000-69585600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr14:69581000-69586000	Strong transcription	NH-A	brain
43	chr14:69581200-69585000	Strong transcription	NHLF	lung
44	chr14:69581200-69585800	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr14:69581200-69586000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:69581400-69585200	Strong transcription	Brain Hippocampus Middle	brain
47	chr14:69581400-69585600	Strong transcription	Brain Cingulate Gyrus	brain
48	chr14:69581400-69585600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:69581400-69585600	Strong transcription	Fetal Brain Female	brain
50	chr14:69581400-69586400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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