Variant report

Variant	rs55714609
Chromosome Location	chr14:69715004-69715005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69713333..69716497-chr14:69822464..69825610,4	MCF-7	breast:
2	chr14:69714407..69715207-chr14:69754200..69755300,4	MCF-7	breast:
3	chr14:69714246..69715551-chr14:69753965..69755230,6	MCF-7	breast:
4	chr14:69714927..69717262-chr14:69835905..69837953,2	MCF-7	breast:
5	chr14:69714529..69715402-chr14:69829818..69830391,3	MCF-7	breast:
6	chr14:69714947..69715448-chr14:69926707..69927678,2	MCF-7	breast:
7	chr14:69714714..69715386-chr14:69829473..69830328,2	MCF-7	breast:
8	chr14:69710707..69713270-chr14:69714880..69716416,2	K562	blood:

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11620883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11627004	0.86[ASN][1000 genomes]
rs11627476	0.86[ASN][1000 genomes]
rs12147222	0.86[ASN][1000 genomes]
rs2176255	0.86[ASN][1000 genomes]
rs3742905	0.86[ASN][1000 genomes]
rs4389087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45577339	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55836617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56270411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58761612	1.00[ASN][1000 genomes]
rs59186728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66471927	0.82[EUR][1000 genomes]
rs7144704	1.00[ASN][1000 genomes]
rs72720212	0.86[ASN][1000 genomes]
rs72720218	0.86[ASN][1000 genomes]
rs72720275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72720285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720288	0.93[EUR][1000 genomes]
rs72720290	0.93[EUR][1000 genomes]
rs72720298	1.00[ASN][1000 genomes]
rs8008141	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
3	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
4	chr14:69703400-69719600	Weak transcription	HMEC	breast
5	chr14:69704800-69716600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:69705200-69716200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:69706000-69716200	Weak transcription	HSMMtube	muscle
9	chr14:69706000-69722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:69706200-69716600	Weak transcription	Brain Substantia Nigra	brain
11	chr14:69707200-69716400	Weak transcription	Psoas Muscle	Psoas
12	chr14:69707800-69717000	Weak transcription	Right Ventricle	heart
13	chr14:69707800-69717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:69707800-69717400	Weak transcription	Colonic Mucosa	Colon
15	chr14:69708000-69717200	Weak transcription	Lung	lung
16	chr14:69708200-69717200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:69708400-69721800	Weak transcription	Fetal Brain Female	brain
18	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
19	chr14:69708600-69716000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:69708600-69716400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:69708600-69722000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:69708800-69716600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:69708800-69717200	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:69708800-69718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:69708800-69719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:69708800-69723000	Weak transcription	Fetal Intestine Small	intestine
27	chr14:69709200-69716600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr14:69709200-69722800	Weak transcription	Brain Germinal Matrix	brain
29	chr14:69709400-69715800	Weak transcription	Esophagus	oesophagus
30	chr14:69709400-69716600	Weak transcription	Left Ventricle	heart
31	chr14:69709400-69722600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
33	chr14:69709400-69726400	Weak transcription	Gastric	stomach
34	chr14:69709800-69716800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:69709800-69725400	Weak transcription	Brain Angular Gyrus	brain
36	chr14:69710000-69716600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr14:69711000-69717000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:69712400-69716600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:69713200-69715200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:69713200-69715400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:69713200-69717600	Enhancers	Fetal Muscle Leg	muscle
42	chr14:69713800-69715200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:69713800-69715400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr14:69713800-69715400	Enhancers	Adipose Nuclei	Adipose
45	chr14:69713800-69715600	Enhancers	NHLF	lung
46	chr14:69714000-69715200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:69714200-69715600	Weak transcription	Ovary	ovary
48	chr14:69714200-69716400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr14:69714400-69715200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:69714400-69718400	Weak transcription	Fetal Stomach	stomach

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