Variant report

Variant	rs55836617
Chromosome Location	chr14:69717017-69717018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69714927..69717262-chr14:69835905..69837953,2	MCF-7	breast:
2	chr14:69712401..69714746-chr14:69715640..69718165,2	MCF-7	breast:
3	chr14:69716336..69718485-chr14:69728021..69730750,2	MCF-7	breast:
4	chr14:69716596..69719427-chr14:69725434..69727636,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258520	Chromatin interaction
ENSG00000100626	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11620883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11627004	0.86[ASN][1000 genomes]
rs11627476	0.86[ASN][1000 genomes]
rs12147222	0.86[ASN][1000 genomes]
rs2176255	0.86[ASN][1000 genomes]
rs3742905	0.86[ASN][1000 genomes]
rs4389087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45577339	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56270411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58761612	1.00[ASN][1000 genomes]
rs59186728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66471927	0.82[EUR][1000 genomes]
rs7144704	1.00[ASN][1000 genomes]
rs72720212	0.86[ASN][1000 genomes]
rs72720218	0.86[ASN][1000 genomes]
rs72720275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72720285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72720288	0.93[EUR][1000 genomes]
rs72720290	0.93[EUR][1000 genomes]
rs72720298	1.00[ASN][1000 genomes]
rs8008141	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
2	chr14:69694000-69721400	Weak transcription	HUVEC	blood vessel
3	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
4	chr14:69703400-69719600	Weak transcription	HMEC	breast
5	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:69706000-69722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:69707800-69717200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:69707800-69717400	Weak transcription	Colonic Mucosa	Colon
9	chr14:69708000-69717200	Weak transcription	Lung	lung
10	chr14:69708200-69717200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:69708400-69721800	Weak transcription	Fetal Brain Female	brain
12	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
13	chr14:69708600-69722000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:69708800-69717200	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:69708800-69718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:69708800-69719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:69708800-69723000	Weak transcription	Fetal Intestine Small	intestine
18	chr14:69709200-69722800	Weak transcription	Brain Germinal Matrix	brain
19	chr14:69709400-69722600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
21	chr14:69709400-69726400	Weak transcription	Gastric	stomach
22	chr14:69709800-69725400	Weak transcription	Brain Angular Gyrus	brain
23	chr14:69713200-69717600	Enhancers	Fetal Muscle Leg	muscle
24	chr14:69714400-69718400	Weak transcription	Fetal Stomach	stomach
25	chr14:69714800-69719600	Weak transcription	HSMM	muscle
26	chr14:69714800-69721200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr14:69714800-69726200	Weak transcription	Aorta	Aorta
28	chr14:69715400-69717200	Weak transcription	Adipose Nuclei	Adipose
29	chr14:69715600-69718200	Weak transcription	NHLF	lung
30	chr14:69716200-69717200	Enhancers	HSMMtube	muscle
31	chr14:69716600-69717400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:69716600-69717400	Enhancers	Fetal Muscle Trunk	muscle
33	chr14:69716600-69717400	Enhancers	Left Ventricle	heart
34	chr14:69716600-69717600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:69716600-69724600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:69716800-69717400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr14:69716800-69722000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr14:69717000-69717400	Enhancers	Right Ventricle	heart
39	chr14:69717000-69718200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:69717000-69725200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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