Variant report

Variant	rs7144704
Chromosome Location	chr14:69676083-69676084
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr14:69676055-69676112	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69674696..69677299-chr14:69679790..69682217,2	MCF-7	breast:

Variant related genes	Relation type
EXD2	TF binding region
ENSG00000258957	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1013762	1.00[JPT][hapmap]
rs10498527	1.00[JPT][hapmap]
rs1105625	1.00[JPT][hapmap]
rs11158784	1.00[JPT][hapmap]
rs11158785	1.00[JPT][hapmap]
rs11158786	1.00[JPT][hapmap]
rs11620883	0.88[CEU][hapmap]
rs11621833	0.88[CEU][hapmap]
rs11623999	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11626985	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11627004	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11627476	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12147222	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1275417	1.00[JPT][hapmap]
rs1710989	1.00[JPT][hapmap]
rs1710990	1.00[JPT][hapmap]
rs1914004	1.00[JPT][hapmap]
rs1950712	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2001355	1.00[JPT][hapmap]
rs2176255	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2331918	1.00[JPT][hapmap]
rs3742905	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4389087	0.88[CEU][hapmap]
rs45577339	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899280	1.00[JPT][hapmap]
rs4902695	1.00[JPT][hapmap]
rs55714609	1.00[ASN][1000 genomes]
rs55836617	1.00[ASN][1000 genomes]
rs56270411	1.00[ASN][1000 genomes]
rs56274826	0.83[EUR][1000 genomes]
rs56868917	0.83[EUR][1000 genomes]
rs58761612	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66471927	0.85[EUR][1000 genomes]
rs72718263	1.00[AFR][1000 genomes]
rs72718270	1.00[AFR][1000 genomes]
rs72718279	1.00[AFR][1000 genomes]
rs72720212	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720218	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720225	0.83[EUR][1000 genomes]
rs72720241	0.90[EUR][1000 genomes]
rs72720275	1.00[ASN][1000 genomes]
rs72720276	1.00[ASN][1000 genomes]
rs72720277	1.00[ASN][1000 genomes]
rs72720278	1.00[ASN][1000 genomes]
rs72720280	0.87[ASN][1000 genomes]
rs72720290	1.00[AFR][1000 genomes]
rs72720298	1.00[ASN][1000 genomes]
rs8008141	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323521	1.00[JPT][hapmap]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69658800-69695600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:69658800-69702400	Weak transcription	Gastric	stomach
3	chr14:69659000-69676200	Weak transcription	Left Ventricle	heart
4	chr14:69659000-69677000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:69659000-69679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69659000-69695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:69659000-69695400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:69659000-69702800	Weak transcription	Pancreas	Pancrea
9	chr14:69659200-69676200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:69659200-69676400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:69659200-69679200	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:69659200-69679400	Weak transcription	Aorta	Aorta
13	chr14:69659200-69695600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:69659200-69702600	Weak transcription	Primary B cells from cord blood	blood
15	chr14:69659200-69702800	Weak transcription	Colonic Mucosa	Colon
16	chr14:69659400-69676600	Weak transcription	Adipose Nuclei	Adipose
17	chr14:69659400-69678600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:69659400-69679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:69659400-69695600	Weak transcription	HSMM	muscle
20	chr14:69659600-69676200	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:69659600-69676200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:69659600-69676400	Weak transcription	Fetal Heart	heart
23	chr14:69659600-69676600	Weak transcription	Fetal Lung	lung
24	chr14:69659600-69679400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:69659600-69695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:69659600-69695400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:69659800-69676200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:69659800-69676200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:69659800-69676200	Weak transcription	Brain Angular Gyrus	brain
30	chr14:69659800-69676400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr14:69659800-69676400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:69659800-69676400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:69659800-69676600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:69659800-69676600	Weak transcription	Brain Substantia Nigra	brain
35	chr14:69659800-69680800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr14:69659800-69695600	Weak transcription	Lung	lung
37	chr14:69660200-69676200	Weak transcription	Fetal Brain Female	brain
38	chr14:69660600-69676400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr14:69660600-69676400	Weak transcription	Liver	Liver
40	chr14:69660600-69717200	Weak transcription	Hela-S3	cervix
41	chr14:69660800-69683400	Weak transcription	HepG2	liver
42	chr14:69660800-69695400	Weak transcription	Thymus	Thymus
43	chr14:69663000-69676200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:69663400-69696000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:69664400-69693200	Weak transcription	Psoas Muscle	Psoas
46	chr14:69664400-69701400	Weak transcription	Small Intestine	intestine
47	chr14:69665000-69676600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:69666800-69681200	Weak transcription	Fetal Kidney	kidney
49	chr14:69668600-69680800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:69669200-69676200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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