Variant report

Variant	rs56868917
Chromosome Location	chr14:69571535-69571536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69570211..69571796-chr14:69576247..69578474,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11626985	1.00[EUR][1000 genomes]
rs11627004	1.00[EUR][1000 genomes]
rs11627476	1.00[EUR][1000 genomes]
rs12147222	1.00[EUR][1000 genomes]
rs1884631	0.83[ASN][1000 genomes]
rs1950712	0.83[ASN][1000 genomes]
rs2176255	1.00[EUR][1000 genomes]
rs2877521	0.83[ASN][1000 genomes]
rs2877522	0.83[ASN][1000 genomes]
rs2877523	0.83[ASN][1000 genomes]
rs3742905	1.00[EUR][1000 genomes]
rs55975366	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56097892	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56274826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58761612	0.81[EUR][1000 genomes]
rs7144704	0.83[EUR][1000 genomes]
rs72718286	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718291	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718292	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720212	1.00[EUR][1000 genomes]
rs72720218	1.00[EUR][1000 genomes]
rs72720225	1.00[EUR][1000 genomes]
rs72720241	0.90[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
2	chr14:69558600-69572000	Weak transcription	Brain Germinal Matrix	brain
3	chr14:69558600-69578600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:69558800-69572000	Weak transcription	Esophagus	oesophagus
5	chr14:69558800-69572000	Weak transcription	Spleen	Spleen
6	chr14:69558800-69581600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:69558800-69582000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:69558800-69595800	Weak transcription	Hela-S3	cervix
9	chr14:69559000-69583800	Weak transcription	Colonic Mucosa	Colon
10	chr14:69560400-69589400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:69560600-69575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:69561200-69572000	Weak transcription	Gastric	stomach
13	chr14:69561200-69577200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:69561200-69581600	Weak transcription	Aorta	Aorta
15	chr14:69561200-69581600	Weak transcription	Lung	lung
16	chr14:69561200-69581600	Weak transcription	Pancreas	Pancrea
17	chr14:69561200-69581600	Weak transcription	Small Intestine	intestine
18	chr14:69561400-69581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69561600-69572000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:69561600-69581600	Weak transcription	Brain Angular Gyrus	brain
21	chr14:69561600-69581600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:69561800-69572000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:69561800-69572000	Weak transcription	Left Ventricle	heart
24	chr14:69561800-69581600	Weak transcription	Fetal Heart	heart
25	chr14:69562000-69582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:69562600-69571600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:69563400-69572000	Weak transcription	Dnd41	blood
28	chr14:69563400-69584600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:69563600-69581400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:69563800-69572000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr14:69563800-69574800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:69564000-69581400	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:69564000-69581800	Weak transcription	Brain Substantia Nigra	brain
34	chr14:69564000-69584600	Weak transcription	Fetal Brain Male	brain
35	chr14:69565000-69572000	Weak transcription	Fetal Stomach	stomach
36	chr14:69565000-69572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:69565000-69584400	Weak transcription	Right Ventricle	heart
38	chr14:69565200-69572000	Weak transcription	Fetal Intestine Large	intestine
39	chr14:69565200-69572000	Weak transcription	Thymus	Thymus
40	chr14:69565200-69572000	Weak transcription	HSMMtube	muscle
41	chr14:69565200-69573800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr14:69565200-69574600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr14:69565200-69580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:69565200-69581200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr14:69565200-69582800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr14:69565200-69583800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr14:69565200-69584000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr14:69565200-69596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr14:69565400-69582000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:69566000-69583600	Strong transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links