Variant report

Variant	rs11627476
Chromosome Location	chr14:69596615-69596616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69590100..69592571-chr14:69595997..69597678,2	K562	blood:
2	chr14:69596019..69596748-chr14:69708816..69709555,3	MCF-7	breast:
3	chr14:69595719..69596845-chr14:69754005..69754946,3	MCF-7	breast:
4	chr14:69592620..69595171-chr14:69596587..69598380,2	K562	blood:
5	chr14:69594222..69597664-chr14:69598109..69600741,4	MCF-7	breast:
6	chr14:69595020..69597748-chr14:69657306..69660377,4	MCF-7	breast:
7	chr14:69595999..69598242-chr14:69617492..69620242,3	MCF-7	breast:
8	chr14:69595285..69597490-chr14:69864217..69866963,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000081177	Chromatin interaction
ENSG00000029364	Chromatin interaction
ENSG00000139990	Chromatin interaction
ENSG00000258957	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013762	1.00[JPT][hapmap]
rs10498527	1.00[JPT][hapmap]
rs1105625	1.00[JPT][hapmap]
rs11158784	1.00[JPT][hapmap]
rs11158785	1.00[JPT][hapmap]
rs11158786	1.00[JPT][hapmap]
rs11620883	0.88[CEU][hapmap]
rs11621833	0.88[CEU][hapmap]
rs11623999	0.88[CEU][hapmap]
rs11626985	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11627004	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147222	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275417	1.00[JPT][hapmap]
rs1710989	1.00[JPT][hapmap]
rs1710990	1.00[JPT][hapmap]
rs1884631	0.83[ASN][1000 genomes]
rs1914004	1.00[JPT][hapmap]
rs1950712	1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs2001355	1.00[JPT][hapmap]
rs2176255	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331918	1.00[JPT][hapmap]
rs2877521	0.83[ASN][1000 genomes]
rs2877522	0.83[ASN][1000 genomes]
rs2877523	0.83[ASN][1000 genomes]
rs3742905	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389087	0.88[CEU][hapmap]
rs45577339	0.86[ASN][1000 genomes]
rs4899280	1.00[JPT][hapmap]
rs4902695	1.00[JPT][hapmap]
rs55714609	0.86[ASN][1000 genomes]
rs55836617	0.86[ASN][1000 genomes]
rs55975366	0.93[EUR][1000 genomes]
rs56097892	0.93[EUR][1000 genomes]
rs56270411	0.86[ASN][1000 genomes]
rs56274826	1.00[EUR][1000 genomes]
rs56868917	1.00[EUR][1000 genomes]
rs58761612	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144704	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72718286	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72718291	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72718292	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72720212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720225	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720241	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720275	0.86[ASN][1000 genomes]
rs72720276	0.86[ASN][1000 genomes]
rs72720277	0.86[ASN][1000 genomes]
rs72720278	0.86[ASN][1000 genomes]
rs72720298	0.86[ASN][1000 genomes]
rs8008141	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[ASN][1000 genomes]
rs9323521	1.00[JPT][hapmap]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69585000-69599600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:69585000-69600000	Weak transcription	Right Ventricle	heart
4	chr14:69585000-69604400	Weak transcription	Spleen	Spleen
5	chr14:69585200-69600000	Weak transcription	Aorta	Aorta
6	chr14:69585200-69600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:69585200-69605800	Weak transcription	Lung	lung
8	chr14:69585600-69600200	Weak transcription	Esophagus	oesophagus
9	chr14:69585600-69609200	Weak transcription	Fetal Kidney	kidney
10	chr14:69588800-69599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69589200-69598000	Weak transcription	Psoas Muscle	Psoas
12	chr14:69590600-69599800	Weak transcription	Gastric	stomach
13	chr14:69595200-69596800	Enhancers	Brain Hippocampus Middle	brain
14	chr14:69595200-69597000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr14:69595400-69597400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:69595400-69597600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:69595400-69598200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:69595400-69605400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr14:69595600-69596800	Enhancers	Brain Anterior Caudate	brain
20	chr14:69595600-69596800	Enhancers	Brain Germinal Matrix	brain
21	chr14:69595600-69597200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr14:69595600-69597400	Enhancers	Osteobl	bone
23	chr14:69595600-69598400	Enhancers	Liver	Liver
24	chr14:69595600-69600600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr14:69595600-69602000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr14:69595600-69602400	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr14:69595800-69596800	Enhancers	Brain Angular Gyrus	brain
28	chr14:69595800-69596800	Enhancers	Brain Cingulate Gyrus	brain
29	chr14:69595800-69596800	Enhancers	Fetal Heart	heart
30	chr14:69595800-69596800	Enhancers	HSMM	muscle
31	chr14:69595800-69597000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr14:69595800-69597000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:69595800-69597000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr14:69595800-69597000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr14:69595800-69597000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr14:69595800-69597000	Enhancers	Rectal Smooth Muscle	rectum
37	chr14:69595800-69597000	Enhancers	NH-A	brain
38	chr14:69595800-69597200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:69595800-69597200	Enhancers	NHLF	lung
40	chr14:69595800-69597600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:69595800-69598200	Enhancers	Primary T cells from cord blood	blood
42	chr14:69595800-69598200	Enhancers	NHDF-Ad	bronchial
43	chr14:69595800-69598400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr14:69595800-69598600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:69595800-69599200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr14:69595800-69600400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:69595800-69600600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr14:69595800-69601200	Enhancers	Colon Smooth Muscle	Colon
49	chr14:69595800-69602600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr14:69596000-69596800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links