Variant report

Variant	rs2176255
Chromosome Location	chr14:69615841-69615842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69614281..69621283-chr14:69656459..69660724,14	MCF-7	breast:
2	chr14:69609955..69612988-chr14:69613460..69616527,3	K562	blood:
3	chr14:69614483..69616460-chr14:70174912..70176900,2	MCF-7	breast:
4	chr14:69614082..69618294-chr14:69668784..69671867,3	MCF-7	breast:
5	chr14:69596677..69600515-chr14:69612349..69615880,3	K562	blood:

Variant related genes	Relation type
ENSG00000258957	Chromatin interaction
ENSG00000081177	Chromatin interaction
ENSG00000206768	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013762	1.00[JPT][hapmap]
rs10498527	1.00[JPT][hapmap]
rs1105625	1.00[JPT][hapmap]
rs11158784	1.00[JPT][hapmap]
rs11158785	1.00[JPT][hapmap]
rs11158786	1.00[JPT][hapmap]
rs11620883	0.88[CEU][hapmap]
rs11621833	0.88[CEU][hapmap]
rs11623999	0.88[CEU][hapmap]
rs11626985	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11627004	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627476	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275417	1.00[JPT][hapmap]
rs1710989	1.00[JPT][hapmap]
rs1710990	1.00[JPT][hapmap]
rs1884631	0.83[ASN][1000 genomes]
rs1914004	1.00[JPT][hapmap]
rs1950712	1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs2001355	1.00[JPT][hapmap]
rs2331918	1.00[JPT][hapmap]
rs2877521	0.83[ASN][1000 genomes]
rs2877522	0.83[ASN][1000 genomes]
rs2877523	0.83[ASN][1000 genomes]
rs3742905	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389087	0.88[CEU][hapmap]
rs45577339	0.86[ASN][1000 genomes]
rs4899280	1.00[JPT][hapmap]
rs4902695	1.00[JPT][hapmap]
rs55714609	0.86[ASN][1000 genomes]
rs55836617	0.86[ASN][1000 genomes]
rs55975366	0.93[EUR][1000 genomes]
rs56097892	0.93[EUR][1000 genomes]
rs56270411	0.86[ASN][1000 genomes]
rs56274826	1.00[EUR][1000 genomes]
rs56868917	1.00[EUR][1000 genomes]
rs58761612	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144704	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72718286	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72718291	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72718292	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72720212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720218	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720225	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720241	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720275	0.86[ASN][1000 genomes]
rs72720276	0.86[ASN][1000 genomes]
rs72720277	0.86[ASN][1000 genomes]
rs72720278	0.86[ASN][1000 genomes]
rs72720298	0.86[ASN][1000 genomes]
rs8008141	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[ASN][1000 genomes]
rs9323521	1.00[JPT][hapmap]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69583200-69618000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:69596600-69616400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:69596600-69617000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:69600000-69617000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:69600400-69616800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:69600400-69616800	Weak transcription	Fetal Brain Male	brain
7	chr14:69600600-69617800	Weak transcription	Aorta	Aorta
8	chr14:69601000-69616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:69601000-69617000	Weak transcription	Ovary	ovary
10	chr14:69601000-69618000	Weak transcription	Esophagus	oesophagus
11	chr14:69601400-69616000	Weak transcription	Hela-S3	cervix
12	chr14:69604800-69616800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:69605000-69616600	Weak transcription	Brain Germinal Matrix	brain
14	chr14:69605200-69616800	Weak transcription	Small Intestine	intestine
15	chr14:69605200-69617400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr14:69605400-69617000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:69605400-69617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:69605400-69617600	Weak transcription	Brain Substantia Nigra	brain
19	chr14:69605600-69616000	Weak transcription	Fetal Heart	heart
20	chr14:69605600-69616800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:69605600-69617600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr14:69605600-69617800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:69605800-69617000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:69605800-69617400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:69605800-69617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:69605800-69617600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:69605800-69617600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:69606000-69617400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:69606200-69616800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:69606200-69616800	Weak transcription	Psoas Muscle	Psoas
31	chr14:69606200-69617400	Weak transcription	Brain Anterior Caudate	brain
32	chr14:69606600-69618000	Weak transcription	Lung	lung
33	chr14:69607200-69617200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:69607600-69616000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:69609400-69616200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:69609400-69616400	Weak transcription	Right Ventricle	heart
37	chr14:69609400-69616800	Weak transcription	Brain Angular Gyrus	brain
38	chr14:69609400-69617400	Weak transcription	Fetal Stomach	stomach
39	chr14:69609800-69617000	Weak transcription	Fetal Kidney	kidney
40	chr14:69610000-69617400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:69610800-69616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr14:69611400-69616000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:69611400-69616600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:69611400-69617400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:69611800-69617200	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:69612000-69617000	Weak transcription	Pancreas	Pancrea
47	chr14:69612000-69617400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:69612000-69617800	Weak transcription	Fetal Intestine Small	intestine
49	chr14:69612000-69618000	Weak transcription	Gastric	stomach
50	chr14:69612600-69616400	Strong transcription	Primary B cells from cord blood	blood

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