Variant report

Variant	rs8014402
Chromosome Location	chr14:69508063-69508064
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69503673..69505279-chr14:69507690..69509236,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10498527	1.00[CHB][hapmap]
rs1105625	1.00[CHB][hapmap]
rs11158784	1.00[CHB][hapmap]
rs11158785	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs11158786	1.00[CHB][hapmap]
rs1275207	0.89[ASN][1000 genomes]
rs1275406	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1275417	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs1275419	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs1629783	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1710989	1.00[CHB][hapmap]
rs1710990	1.00[CHB][hapmap]
rs1710993	1.00[CHB][hapmap];0.92[YRI][hapmap];0.89[ASN][1000 genomes]
rs17758214	0.89[ASN][1000 genomes]
rs2001355	1.00[CHB][hapmap]
rs2331918	1.00[CHB][hapmap]
rs4899280	1.00[CHB][hapmap]
rs61981619	0.90[ASN][1000 genomes]
rs7141235	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs761899	0.90[ASN][1000 genomes]
rs9323521	1.00[CHB][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69502200-69508600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:69504000-69508400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:69504800-69508400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69504800-69508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:69504800-69509600	Weak transcription	Pancreas	Pancrea
6	chr14:69505000-69508600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:69505200-69509600	Weak transcription	Spleen	Spleen
8	chr14:69505400-69510000	Weak transcription	Fetal Heart	heart
9	chr14:69505400-69510200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:69505800-69508800	Weak transcription	Ovary	ovary
11	chr14:69505800-69509200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:69505800-69509200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:69505800-69509600	Weak transcription	Esophagus	oesophagus
14	chr14:69505800-69509600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:69505800-69509800	Weak transcription	Placenta	Placenta
16	chr14:69505800-69509800	Weak transcription	Left Ventricle	heart
17	chr14:69505800-69509800	Weak transcription	Right Atrium	heart
18	chr14:69505800-69510600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:69505800-69510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:69506000-69508600	Weak transcription	Brain Angular Gyrus	brain
21	chr14:69506000-69508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:69506000-69508800	Weak transcription	Brain Anterior Caudate	brain
23	chr14:69506000-69509400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr14:69506000-69509400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:69506000-69511200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr14:69506200-69508600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:69506200-69508600	Weak transcription	Adipose Nuclei	Adipose
28	chr14:69506200-69509600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:69506200-69510000	Weak transcription	Right Ventricle	heart
30	chr14:69506400-69508400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:69506400-69508800	Weak transcription	NHDF-Ad	bronchial
32	chr14:69506400-69509200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr14:69506400-69509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:69506400-69509600	Weak transcription	Psoas Muscle	Psoas
35	chr14:69506400-69509800	Weak transcription	NHLF	lung
36	chr14:69506400-69510200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr14:69506400-69510400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:69506600-69508600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr14:69506600-69508600	Weak transcription	HSMMtube	muscle
40	chr14:69506600-69508800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:69506600-69508800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:69506600-69508800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69506600-69509200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:69506600-69509400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr14:69506600-69509400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr14:69506600-69509400	Weak transcription	Osteobl	bone
47	chr14:69506600-69509600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:69506600-69509600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:69506600-69509600	Weak transcription	HSMM	muscle
50	chr14:69506600-69511000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links