Variant report

Variant	rs17758214
Chromosome Location	chr14:69501816-69501817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69492929..69495607-chr14:69501759..69504340,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10498527	1.00[CHB][hapmap]
rs1105625	1.00[CHB][hapmap]
rs11158784	1.00[CHB][hapmap]
rs11158785	1.00[CHB][hapmap]
rs11158786	1.00[CHB][hapmap]
rs1275207	1.00[ASN][1000 genomes]
rs1275406	1.00[ASN][1000 genomes]
rs1275417	1.00[CHB][hapmap]
rs1629783	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1710989	1.00[CHB][hapmap]
rs1710990	1.00[CHB][hapmap]
rs1710993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2001355	1.00[CHB][hapmap]
rs2331918	1.00[CHB][hapmap]
rs45557240	1.00[AFR][1000 genomes]
rs4899280	1.00[CHB][hapmap]
rs7141235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014402	0.89[ASN][1000 genomes]
rs9323521	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69486000-69503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69500800-69502400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:69501000-69502000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:69501000-69502200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr14:69501000-69502400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:69501000-69502600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:69501000-69503000	Enhancers	HUVEC	blood vessel
9	chr14:69501000-69506600	Enhancers	Osteobl	bone
10	chr14:69501200-69502000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr14:69501200-69502200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr14:69501200-69502200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:69501200-69502400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:69501200-69502400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:69501200-69502600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr14:69501200-69502600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:69501200-69502600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:69501200-69502600	Enhancers	NH-A	brain
19	chr14:69501400-69502000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr14:69501400-69502000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr14:69501400-69502200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr14:69501400-69502200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr14:69501400-69502400	Weak transcription	Aorta	Aorta
24	chr14:69501400-69505000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:69501400-69505200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:69501600-69502000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:69501600-69502200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:69501600-69502400	Enhancers	HSMM	muscle
29	chr14:69501600-69502600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr14:69501600-69506200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:69501800-69502000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:69501800-69502000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr14:69501800-69502200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:69501800-69502600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr14:69501800-69502600	Enhancers	Fetal Kidney	kidney
36	chr14:69501800-69503800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr14:69501800-69504400	Weak transcription	NHLF	lung
38	chr14:69501800-69506000	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links