Variant report

Variant	rs10143997
Chromosome Location	chr14:32810505-32810506
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32789689..32792160-chr14:32808622..32812879,3	MCF-7	breast:
2	chr14:32807865..32809719-chr14:32810240..32812970,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17098811	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098817	0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9322895	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798445	chr14:32808361-32813639	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
3	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
4	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
5	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
8	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
9	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
10	chr14:32805800-32810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:32806200-32811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:32806200-32811800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:32806400-32811200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:32806400-32811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:32806400-32811400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:32806400-32811600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:32806400-32811800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:32807200-32810800	Weak transcription	Brain Anterior Caudate	brain
19	chr14:32807200-32814600	Weak transcription	Aorta	Aorta
20	chr14:32809000-32810800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:32809000-32811000	Weak transcription	Brain Angular Gyrus	brain
22	chr14:32809000-32811000	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:32809200-32811400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:32809200-32813200	Weak transcription	Brain Germinal Matrix	brain
25	chr14:32809400-32814400	Weak transcription	HSMMtube	muscle
26	chr14:32809600-32815200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:32809800-32815600	Enhancers	NHEK	skin
28	chr14:32810000-32815600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:32810200-32811400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:32810400-32812400	Enhancers	Brain Substantia Nigra	brain
31	chr14:32810400-32815200	Enhancers	HMEC	breast

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