Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1014514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12490079	0.90[ASN][1000 genomes]
rs13062862	0.81[EUR][1000 genomes]
rs13077795	0.83[EUR][1000 genomes]
rs13317800	0.81[EUR][1000 genomes]
rs1398741	0.82[EUR][1000 genomes]
rs1398742	0.83[EUR][1000 genomes]
rs1476316	0.83[EUR][1000 genomes]
rs1476317	0.83[EUR][1000 genomes]
rs1513298	0.83[EUR][1000 genomes]
rs1513299	0.83[EUR][1000 genomes]
rs1513307	0.81[EUR][1000 genomes]
rs16841279	0.83[EUR][1000 genomes]
rs16841281	0.83[EUR][1000 genomes]
rs16841326	0.83[EUR][1000 genomes]
rs2137594	0.83[EUR][1000 genomes]
rs2175747	0.83[EUR][1000 genomes]
rs2342601	0.83[EUR][1000 genomes]
rs2670339	0.83[EUR][1000 genomes]
rs2700588	0.82[EUR][1000 genomes]
rs2880365	0.83[EUR][1000 genomes]
rs4928200	0.94[ASN][1000 genomes]
rs6804164	0.81[AFR][1000 genomes]
rs7633545	0.82[EUR][1000 genomes]
rs9818744	0.81[EUR][1000 genomes]
rs9823688	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99242600-99254000	Weak transcription	HUVEC	blood vessel
2	chr3:99243400-99251000	Weak transcription	Osteobl	bone
3	chr3:99246200-99254200	Weak transcription	NHLF	lung
4	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:99247000-99251000	Weak transcription	Aorta	Aorta
6	chr3:99248200-99253200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:99248800-99253600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:99249000-99251000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:99249000-99254200	Weak transcription	Hela-S3	cervix
10	chr3:99249200-99250600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:99249200-99251000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:99249200-99251000	Weak transcription	NHDF-Ad	bronchial
13	chr3:99249200-99254200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:99249200-99254600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:99249200-99256000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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