Variant report

Variant	rs6804164
Chromosome Location	chr3:99262240-99262241
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1014514	0.83[AFR][1000 genomes]
rs1014515	0.81[AFR][1000 genomes]
rs10935836	0.96[ASN][1000 genomes]
rs12488298	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12488332	0.96[ASN][1000 genomes]
rs1513297	0.96[ASN][1000 genomes]
rs1513313	0.96[ASN][1000 genomes]
rs17775207	0.96[ASN][1000 genomes]
rs17775314	0.96[ASN][1000 genomes]
rs2063638	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs59039617	0.91[ASN][1000 genomes]
rs6440679	0.96[ASN][1000 genomes]
rs6765526	0.91[ASN][1000 genomes]
rs73134321	0.90[ASN][1000 genomes]
rs73134343	0.91[ASN][1000 genomes]
rs73144669	0.94[ASN][1000 genomes]
rs7646873	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99256600-99263800	Weak transcription	Aorta	Aorta
2	chr3:99260800-99264600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:99260800-99264800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99261200-99264800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:99261200-99265600	Enhancers	Hela-S3	cervix
6	chr3:99261400-99264400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:99261400-99264400	Enhancers	HMEC	breast
8	chr3:99261600-99262400	Flanking Active TSS	HUVEC	blood vessel
9	chr3:99261600-99265600	Enhancers	HSMM	muscle
10	chr3:99261800-99262400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:99261800-99262400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:99261800-99262600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:99261800-99262600	Enhancers	Placenta	Placenta
14	chr3:99261800-99263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:99261800-99263000	Enhancers	Spleen	Spleen
16	chr3:99261800-99264000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:99261800-99264400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:99261800-99264400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr3:99261800-99264400	Enhancers	Osteobl	bone
20	chr3:99261800-99264600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:99261800-99264600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:99261800-99264600	Enhancers	Adipose Nuclei	Adipose
23	chr3:99261800-99264800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:99262000-99262600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:99262000-99262600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:99262000-99263000	Enhancers	Right Atrium	heart
27	chr3:99262000-99264600	Enhancers	NHLF	lung
28	chr3:99262000-99265000	Enhancers	HSMMtube	muscle
29	chr3:99262000-99265400	Enhancers	NHDF-Ad	bronchial
30	chr3:99262200-99262600	Enhancers	NHEK	skin
31	chr3:99262200-99263800	Weak transcription	NH-A	brain

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