Variant report

Variant	rs7646873
Chromosome Location	chr3:99264583-99264584
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10935836	1.00[ASN][1000 genomes]
rs12488298	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12488332	1.00[ASN][1000 genomes]
rs1513297	1.00[ASN][1000 genomes]
rs1513313	1.00[ASN][1000 genomes]
rs17775207	1.00[ASN][1000 genomes]
rs17775314	1.00[ASN][1000 genomes]
rs2063638	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs59039617	0.96[ASN][1000 genomes]
rs6440679	1.00[ASN][1000 genomes]
rs6765526	0.96[ASN][1000 genomes]
rs6804164	0.96[ASN][1000 genomes]
rs73134321	0.94[ASN][1000 genomes]
rs73134343	0.96[ASN][1000 genomes]
rs73144669	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99260800-99264600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:99260800-99264800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99261200-99264800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:99261200-99265600	Enhancers	Hela-S3	cervix
5	chr3:99261600-99265600	Enhancers	HSMM	muscle
6	chr3:99261800-99264600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:99261800-99264600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:99261800-99264600	Enhancers	Adipose Nuclei	Adipose
9	chr3:99261800-99264800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:99262000-99264600	Enhancers	NHLF	lung
11	chr3:99262000-99265000	Enhancers	HSMMtube	muscle
12	chr3:99262000-99265400	Enhancers	NHDF-Ad	bronchial
13	chr3:99262800-99265400	Enhancers	NHEK	skin
14	chr3:99263400-99265200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:99263400-99265600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:99263600-99264800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:99263800-99264600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:99263800-99265000	Enhancers	Stomach Mucosa	stomach
19	chr3:99263800-99265200	Enhancers	Fetal Lung	lung
20	chr3:99264000-99264600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:99264000-99265600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:99264200-99264600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:99264200-99264600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:99264200-99264600	Enhancers	Brain Angular Gyrus	brain
25	chr3:99264200-99265000	Active TSS	Right Atrium	heart
26	chr3:99264200-99265400	Flanking Active TSS	HUVEC	blood vessel
27	chr3:99264400-99264600	Weak transcription	Ovary	ovary
28	chr3:99264400-99264600	Flanking Active TSS	Osteobl	bone
29	chr3:99264400-99265200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr3:99264400-99265200	Active TSS	Aorta	Aorta
31	chr3:99264400-99267200	Weak transcription	HMEC	breast

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