Variant report

Variant	rs10145894
Chromosome Location	chr14:56316536-56316537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56304789..56307595-chr14:56316105..56318121,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10130136	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10131235	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10133911	0.89[ASN][1000 genomes]
rs10140629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142391	0.89[ASN][1000 genomes]
rs10142961	0.89[ASN][1000 genomes]
rs10144024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147997	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs28455944	0.90[EUR][1000 genomes]
rs28485421	0.90[EUR][1000 genomes]
rs28498087	0.89[ASN][1000 genomes]
rs28520487	0.89[ASN][1000 genomes]
rs28540836	0.89[ASN][1000 genomes]
rs7154894	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56311000-56316800	Weak transcription	Stomach Mucosa	stomach
2	chr14:56313400-56316800	Weak transcription	Right Atrium	heart
3	chr14:56314400-56317000	Weak transcription	Adipose Nuclei	Adipose
4	chr14:56314400-56317400	Weak transcription	Hela-S3	cervix
5	chr14:56314600-56317200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:56315000-56317000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:56315000-56317400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:56315200-56316600	Weak transcription	Aorta	Aorta
9	chr14:56315200-56316800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:56315200-56316800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:56315200-56317400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:56315200-56317400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:56315200-56317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:56315200-56317400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr14:56315200-56317400	Weak transcription	HSMMtube	muscle
16	chr14:56315200-56317400	Weak transcription	NHLF	lung
17	chr14:56315200-56317600	Weak transcription	HSMM	muscle
18	chr14:56315200-56317800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:56315400-56317600	Weak transcription	NH-A	brain
20	chr14:56315600-56316800	Weak transcription	NHDF-Ad	bronchial
21	chr14:56316400-56317400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:56316400-56317600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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