Variant report

Variant	rs28520487
Chromosome Location	chr14:56261395-56261396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10130136	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10131235	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10133911	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10140629	0.89[ASN][1000 genomes]
rs10142391	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10142961	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10144024	0.89[ASN][1000 genomes]
rs10145894	0.89[ASN][1000 genomes]
rs10147997	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28498087	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28540836	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7154894	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901970	chr14:56183127-56265176	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv901971	chr14:56183127-56265176	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv901976	chr14:56192577-56265176	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56256400-56261800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:56257400-56263000	Enhancers	Hela-S3	cervix
3	chr14:56257600-56271600	Weak transcription	Gastric	stomach
4	chr14:56260400-56262600	Enhancers	Stomach Mucosa	stomach
5	chr14:56260800-56261400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:56260800-56262000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:56260800-56262600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr14:56260800-56262800	Enhancers	K562	blood
9	chr14:56261000-56261800	Enhancers	NHEK	skin
10	chr14:56261000-56262000	Weak transcription	Esophagus	oesophagus
11	chr14:56261000-56262200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:56261000-56262200	Enhancers	HMEC	breast
13	chr14:56261000-56264000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:56261200-56261600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:56261200-56262000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:56261200-56262200	Enhancers	A549	lung
17	chr14:56261200-56262400	Enhancers	HUVEC	blood vessel
18	chr14:56261200-56262600	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links