Variant report

Variant	rs10146811
Chromosome Location	chr14:81578238-81578239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10144209	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146801	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159491	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11625902	0.82[EUR][1000 genomes]
rs12878605	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881644	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883448	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884578	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12885526	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1861272	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs1990595	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1990596	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024425	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024426	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2080305	0.81[CEU][hapmap]
rs2080306	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2371468	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2371469	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2888049	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783941	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs3783942	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs7147527	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151769	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7160420	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7160596	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs917983	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs917984	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1038949	chr14:81543590-81579896	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81566400-81581200	Weak transcription	Fetal Thymus	thymus
3	chr14:81570200-81581200	Weak transcription	Pancreas	Pancrea
4	chr14:81572600-81591400	Weak transcription	Liver	Liver
5	chr14:81576400-81579800	Strong transcription	Dnd41	blood
6	chr14:81578000-81578800	Weak transcription	Thymus	Thymus
7	chr14:81578200-81579000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr14:81578200-81580200	Enhancers	Primary monocytes fromperipheralblood	blood

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