Variant report

Variant	rs12883448
Chromosome Location	chr14:81577442-81577443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10144209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146801	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146811	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159491	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11625902	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12878605	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12881644	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884578	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12885526	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1861272	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1990595	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1990596	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024425	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024426	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2080306	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2371468	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2371469	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2888049	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783941	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3783942	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7147527	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151769	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7160420	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7160596	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs917983	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs917984	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1038949	chr14:81543590-81579896	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81566400-81581200	Weak transcription	Fetal Thymus	thymus
3	chr14:81570200-81581200	Weak transcription	Pancreas	Pancrea
4	chr14:81572600-81577600	Weak transcription	Thymus	Thymus
5	chr14:81572600-81591400	Weak transcription	Liver	Liver
6	chr14:81576400-81579800	Strong transcription	Dnd41	blood

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