Variant report

Variant	rs10146854
Chromosome Location	chr14:97208145-97208146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10136975	0.95[ASN][1000 genomes]
rs10139304	0.89[ASN][1000 genomes]
rs10139694	0.95[ASN][1000 genomes]
rs10143101	0.96[ASN][1000 genomes]
rs10143369	0.95[ASN][1000 genomes]
rs11160362	0.96[ASN][1000 genomes]
rs11160363	0.95[ASN][1000 genomes]
rs11623288	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11629293	0.84[ASN][1000 genomes]
rs12147403	0.94[ASN][1000 genomes]
rs12434260	0.95[ASN][1000 genomes]
rs12587775	0.84[EUR][1000 genomes]
rs12880425	0.90[ASN][1000 genomes]
rs12882386	0.89[EUR][1000 genomes]
rs12895746	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17094403	0.80[ASN][1000 genomes]
rs1951837	0.89[ASN][1000 genomes]
rs28670537	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2887581	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34142794	0.95[ASN][1000 genomes]
rs34344944	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34742182	0.89[ASN][1000 genomes]
rs35981455	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4243716	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4578584	0.83[ASN][1000 genomes]
rs59880225	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66487336	0.95[ASN][1000 genomes]
rs71415050	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157651	0.93[ASN][1000 genomes]
rs737209	0.96[ASN][1000 genomes]
rs8009078	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs8012361	0.91[ASN][1000 genomes]
rs8014262	0.83[ASN][1000 genomes]
rs8015493	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs912343	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv85164	chr14:97207464-97209699	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97206200-97208800	Enhancers	Fetal Brain Male	brain
2	chr14:97206800-97208400	Bivalent/Poised TSS	HSMM	muscle
3	chr14:97207400-97208200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr14:97207400-97208200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:97207400-97208200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:97207400-97208200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:97207400-97208200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:97207400-97208200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:97207400-97208200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:97207400-97208200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
11	chr14:97207400-97208200	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr14:97207400-97208200	Bivalent/Poised TSS	A549	lung
13	chr14:97207400-97208200	Bivalent/Poised TSS	Osteobl	bone
14	chr14:97207400-97208400	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr14:97207400-97208400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:97207400-97208400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:97207400-97208400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:97207400-97208400	Active TSS	Brain Anterior Caudate	brain
19	chr14:97207400-97208600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr14:97207400-97208600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr14:97207400-97208800	Active TSS	H9 Cell Line	embryonic stem cell
22	chr14:97207600-97208200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:97207600-97208200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
24	chr14:97207600-97208200	Bivalent/Poised TSS	Ovary	ovary
25	chr14:97207600-97208400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:97207600-97208400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:97207600-97208400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:97207600-97208400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr14:97207600-97208400	Enhancers	Pancreas	Pancrea
30	chr14:97207600-97208400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
31	chr14:97207600-97208600	Active TSS	H1 Cell Line	embryonic stem cell
32	chr14:97207600-97208600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:97207800-97208200	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:97207800-97208200	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr14:97207800-97208200	Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr14:97207800-97208200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:97207800-97208200	Active TSS	Brain Cingulate Gyrus	brain
38	chr14:97207800-97208200	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr14:97207800-97208200	Bivalent/Poised TSS	Fetal Stomach	stomach
40	chr14:97207800-97208200	Transcr. at gene 5' and 3'	Right Atrium	heart
41	chr14:97207800-97208200	Flanking Active TSS	Right Ventricle	heart
42	chr14:97207800-97208400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
43	chr14:97207800-97208400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
44	chr14:97207800-97208400	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
45	chr14:97207800-97208400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:97207800-97208400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:97207800-97208400	Active TSS	Brain Germinal Matrix	brain
48	chr14:97207800-97208400	Active TSS	Fetal Brain Female	brain
49	chr14:97207800-97208400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
50	chr14:97207800-97208400	Bivalent/Poised TSS	Thymus	Thymus

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