Variant report

Variant	rs59880225
Chromosome Location	chr14:97217919-97217920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97211622..97213197-chr14:97215486..97218319,2	K562	blood:
2	chr14:97217297..97218852-chr14:97223964..97225978,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10136975	0.92[ASN][1000 genomes]
rs10139304	0.97[ASN][1000 genomes]
rs10139694	0.92[ASN][1000 genomes]
rs10143101	0.93[ASN][1000 genomes]
rs10143369	0.92[ASN][1000 genomes]
rs10146854	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11160362	0.93[ASN][1000 genomes]
rs11160363	0.92[ASN][1000 genomes]
rs11160364	0.83[ASN][1000 genomes]
rs11160365	0.82[ASN][1000 genomes]
rs12147403	0.95[ASN][1000 genomes]
rs12434260	0.92[ASN][1000 genomes]
rs12587775	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12880425	0.82[ASN][1000 genomes]
rs12882386	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12894509	0.82[ASN][1000 genomes]
rs12895746	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1951837	0.97[ASN][1000 genomes]
rs1977264	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28670537	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2887581	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34142794	0.92[ASN][1000 genomes]
rs34344944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34742182	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35981455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243716	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66487336	0.92[ASN][1000 genomes]
rs71415050	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157651	0.93[ASN][1000 genomes]
rs737209	0.93[ASN][1000 genomes]
rs8009078	0.81[ASN][1000 genomes]
rs8012361	0.88[ASN][1000 genomes]
rs8015493	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs912343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv527405	chr14:97216433-97220051	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97215200-97219400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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