Variant report

Variant	rs11160365
Chromosome Location	chr14:97219550-97219551
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10136975	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10139304	0.82[ASN][1000 genomes]
rs10139694	0.83[AMR][1000 genomes]
rs10143369	0.83[AMR][1000 genomes]
rs11160363	0.83[AMR][1000 genomes]
rs11160364	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11160366	0.96[ASN][1000 genomes]
rs12434260	0.83[AMR][1000 genomes]
rs12894509	0.98[ASN][1000 genomes]
rs1951837	0.84[ASN][1000 genomes]
rs1977264	0.96[ASN][1000 genomes]
rs2369898	0.81[ASN][1000 genomes]
rs34142794	0.83[AMR][1000 genomes]
rs34344944	0.82[ASN][1000 genomes]
rs34742182	0.82[ASN][1000 genomes]
rs35981455	0.82[ASN][1000 genomes]
rs59880225	0.82[ASN][1000 genomes]
rs66487336	0.83[AMR][1000 genomes]
rs7157651	0.81[ASN][1000 genomes]
rs8012361	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv527405	chr14:97216433-97220051	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11160365	AK7	cis	brain	BrainEAC

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97218600-97219800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr14:97218800-97219600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:97219200-97221000	Weak transcription	K562	blood
4	chr14:97219400-97219600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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