Variant report

Variant	rs11160364
Chromosome Location	chr14:97218952-97218953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10131890	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs10135222	0.93[CHB][hapmap]
rs10135234	0.82[JPT][hapmap]
rs10135283	0.82[JPT][hapmap]
rs10136975	0.81[ASN][1000 genomes]
rs10139304	0.83[ASN][1000 genomes]
rs10139694	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10143369	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10145396	0.93[CHB][hapmap]
rs11160363	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11160365	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11160366	0.95[ASN][1000 genomes]
rs12147403	0.81[ASN][1000 genomes]
rs12434260	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880425	0.82[CHD][hapmap]
rs12894509	0.99[ASN][1000 genomes]
rs17310204	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs1951837	0.83[ASN][1000 genomes]
rs1957134	0.82[JPT][hapmap]
rs1957135	0.82[JPT][hapmap]
rs1977264	0.98[ASN][1000 genomes]
rs2145638	0.82[JPT][hapmap]
rs34142794	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34344944	0.83[ASN][1000 genomes]
rs34742182	0.83[ASN][1000 genomes]
rs35981455	0.83[ASN][1000 genomes]
rs59880225	0.83[ASN][1000 genomes]
rs66487336	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7157651	0.82[ASN][1000 genomes]
rs7160250	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs8005791	0.93[CHB][hapmap]
rs8012361	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv527405	chr14:97216433-97220051	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11160364	CREBZF	trans	parietal	SCAN
rs11160364	DDX24	cis	parietal	SCAN
rs11160364	OTUB2	cis	cerebellum	SCAN
rs11160364	SERPINA10	cis	cerebellum	SCAN
rs11160364	TRIP11	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97215200-97219400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:97218600-97219400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:97218600-97219800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr14:97218800-97219200	Enhancers	K562	blood
5	chr14:97218800-97219600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links