Variant report

Variant	rs12894509
Chromosome Location	chr14:97214801-97214802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10136975	0.80[ASN][1000 genomes]
rs10139304	0.82[ASN][1000 genomes]
rs10139694	0.80[ASN][1000 genomes]
rs10143369	0.80[ASN][1000 genomes]
rs11160363	0.80[ASN][1000 genomes]
rs11160364	0.99[ASN][1000 genomes]
rs11160365	0.98[ASN][1000 genomes]
rs11160366	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12147403	0.80[ASN][1000 genomes]
rs12434260	0.80[ASN][1000 genomes]
rs1951837	0.82[ASN][1000 genomes]
rs1977264	0.96[ASN][1000 genomes]
rs2369898	0.81[ASN][1000 genomes]
rs28588079	0.82[AMR][1000 genomes]
rs34142794	0.80[ASN][1000 genomes]
rs34344944	0.82[ASN][1000 genomes]
rs34742182	0.82[ASN][1000 genomes]
rs35981455	0.82[ASN][1000 genomes]
rs59880225	0.82[ASN][1000 genomes]
rs66487336	0.80[ASN][1000 genomes]
rs67722203	0.86[AMR][1000 genomes]
rs7157651	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97213200-97215000	Enhancers	Fetal Brain Male	brain
2	chr14:97214000-97215400	Enhancers	Brain Germinal Matrix	brain
3	chr14:97214600-97215200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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