Variant report

Variant	rs10147478
Chromosome Location	chr14:32966846-32966847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32960517..32962763-chr14:32965947..32968898,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10130381	1.00[EUR][1000 genomes]
rs10136639	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12886529	1.00[JPT][hapmap]
rs17099179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10147478	CLEC4GP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32963400-32968800	Active TSS	Right Ventricle	heart
2	chr14:32963600-32967200	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr14:32963800-32967000	Active TSS	Psoas Muscle	Psoas
4	chr14:32963800-32967600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:32964000-32967200	Active TSS	Fetal Heart	heart
6	chr14:32964000-32967600	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr14:32964000-32967800	Active TSS	HSMMtube	muscle
8	chr14:32964400-32969200	Weak transcription	Fetal Lung	lung
9	chr14:32964600-32969200	Weak transcription	Hela-S3	cervix
10	chr14:32964800-32967200	Active TSS	Fetal Muscle Leg	muscle
11	chr14:32964800-32969800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:32965000-32970600	Weak transcription	Aorta	Aorta
13	chr14:32965400-32967200	Enhancers	Brain Angular Gyrus	brain
14	chr14:32965400-32976400	Weak transcription	HSMM	muscle
15	chr14:32965600-32967400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:32966000-32969400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:32966200-32967200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr14:32966200-32967200	Enhancers	Osteobl	bone
19	chr14:32966400-32967400	Weak transcription	Left Ventricle	heart
20	chr14:32966400-32969200	Weak transcription	Brain Substantia Nigra	brain
21	chr14:32966400-32969400	Weak transcription	Brain Anterior Caudate	brain
22	chr14:32966400-32969400	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:32966400-32969400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:32966400-32976800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:32966600-32967800	Weak transcription	Right Atrium	heart
26	chr14:32966600-32969200	Weak transcription	Colon Smooth Muscle	Colon
27	chr14:32966600-32969400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:32966600-32971200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:32966600-32976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:32966800-32969200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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