Variant report

Variant	rs12886529
Chromosome Location	chr14:32902205-32902206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:32902193-32902393	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr14:32902151-32902348	MCF10A-Er-Src	breast:	n/a	n/a
3	E2F4	chr14:32902080-32902217	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr14:32902152-32902291	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
AKAP6	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10147478	1.00[JPT][hapmap]
rs11156744	1.00[JPT][hapmap]
rs11156747	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11621072	0.82[CHB][hapmap]
rs11622937	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11623071	1.00[ASN][1000 genomes]
rs12881167	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12882489	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12886735	0.86[ASN][1000 genomes]
rs12891308	1.00[JPT][hapmap]
rs12894356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17410904	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1951187	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957025	0.84[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1957026	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2383304	1.00[ASN][1000 genomes]
rs34757755	1.00[ASN][1000 genomes]
rs34976846	1.00[ASN][1000 genomes]
rs61981143	1.00[ASN][1000 genomes]
rs941745	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs941749	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32896800-32903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain
4	chr14:32898000-32902600	Weak transcription	Brain Germinal Matrix	brain
5	chr14:32898000-32906200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:32898200-32908200	Weak transcription	Right Atrium	heart
7	chr14:32898400-32902800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:32898400-32903600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:32898400-32908400	Weak transcription	Psoas Muscle	Psoas
10	chr14:32899000-32902600	Weak transcription	Right Ventricle	heart
11	chr14:32899000-32913400	Weak transcription	Fetal Lung	lung
12	chr14:32899600-32906200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr14:32899800-32902600	Weak transcription	K562	blood
14	chr14:32899800-32907400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:32900000-32905800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:32900200-32902400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:32901000-32902400	Enhancers	Colon Smooth Muscle	Colon
18	chr14:32901800-32902600	Active TSS	Ovary	ovary
19	chr14:32901800-32902600	Enhancers	Rectal Smooth Muscle	rectum
20	chr14:32901800-32903200	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr14:32901800-32903400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:32901800-32904200	Enhancers	Brain Angular Gyrus	brain
23	chr14:32901800-32907800	Active TSS	Aorta	Aorta
24	chr14:32902000-32902400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:32902000-32902400	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr14:32902000-32902400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr14:32902000-32902600	Enhancers	Primary B cells from peripheral blood	blood
28	chr14:32902000-32902800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:32902000-32902800	Enhancers	Fetal Heart	heart
30	chr14:32902000-32903000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:32902000-32903000	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr14:32902000-32903000	Enhancers	Left Ventricle	heart
33	chr14:32902000-32903000	Enhancers	Small Intestine	intestine
34	chr14:32902000-32903400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:32902000-32903400	Enhancers	Fetal Intestine Small	intestine
36	chr14:32902000-32904400	Enhancers	Brain Substantia Nigra	brain
37	chr14:32902200-32902400	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr14:32902200-32902400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr14:32902200-32902600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:32902200-32902600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr14:32902200-32902800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:32902200-32902800	Enhancers	Osteobl	bone
43	chr14:32902200-32903000	Enhancers	Esophagus	oesophagus
44	chr14:32902200-32903000	Enhancers	HSMM	muscle
45	chr14:32902200-32903000	Enhancers	HSMMtube	muscle
46	chr14:32902200-32903200	Flanking Active TSS	GM12878-XiMat	blood
47	chr14:32902200-32904400	Enhancers	Rectal Mucosa Donor 31	rectum

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