Variant report

Variant	rs11156744
Chromosome Location	chr14:32896067-32896068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11156747	1.00[JPT][hapmap]
rs12881167	1.00[JPT][hapmap]
rs12882489	1.00[JPT][hapmap]
rs12886529	1.00[JPT][hapmap]
rs12891308	0.90[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12894356	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17410904	1.00[JPT][hapmap]
rs1951187	1.00[JPT][hapmap]
rs1957025	1.00[JPT][hapmap]
rs1957026	1.00[JPT][hapmap]
rs35566397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35972348	0.93[ASN][1000 genomes]
rs8022148	1.00[ASN][1000 genomes]
rs941745	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32887800-32901800	Weak transcription	Ovary	ovary
2	chr14:32891800-32899400	Weak transcription	Osteobl	bone
3	chr14:32892000-32896200	Weak transcription	Right Ventricle	heart
4	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:32895200-32897600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:32895200-32902200	Enhancers	Brain Hippocampus Middle	brain
7	chr14:32895400-32899000	Enhancers	Fetal Heart	heart
8	chr14:32895600-32896400	Enhancers	HUVEC	blood vessel
9	chr14:32895600-32896600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr14:32895600-32897400	Enhancers	Brain Substantia Nigra	brain
11	chr14:32895600-32898200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:32895800-32896200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:32895800-32896200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:32895800-32896200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:32895800-32896200	Enhancers	NH-A	brain
16	chr14:32895800-32896400	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr14:32895800-32896600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:32895800-32896600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:32895800-32896800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:32895800-32896800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:32895800-32896800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:32895800-32896800	Enhancers	Fetal Brain Male	brain
23	chr14:32895800-32896800	Enhancers	Left Ventricle	heart
24	chr14:32895800-32897000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:32895800-32897200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr14:32895800-32897200	Enhancers	Fetal Lung	lung
27	chr14:32895800-32897400	Enhancers	Brain Anterior Caudate	brain
28	chr14:32895800-32897800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:32895800-32898400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:32895800-32898600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr14:32895800-32899200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr14:32896000-32896200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr14:32896000-32896400	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr14:32896000-32896400	Enhancers	Stomach Smooth Muscle	stomach
35	chr14:32896000-32896600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr14:32896000-32896600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:32896000-32896600	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr14:32896000-32896600	Enhancers	Esophagus	oesophagus
39	chr14:32896000-32896800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr14:32896000-32896800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:32896000-32897200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:32896000-32897200	Enhancers	Rectal Smooth Muscle	rectum
43	chr14:32896000-32897400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:32896000-32897400	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr14:32896000-32898200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:32896000-32898600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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