Variant report

Variant	rs12894356
Chromosome Location	chr14:32898583-32898584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11156744	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11156747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11621072	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs11622937	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs11623071	0.93[ASN][1000 genomes]
rs12881167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12882489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12886529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12891308	1.00[JPT][hapmap]
rs17410904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1951187	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1957025	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1957026	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2383304	0.93[ASN][1000 genomes]
rs34757755	0.93[ASN][1000 genomes]
rs34976846	0.93[ASN][1000 genomes]
rs35566397	0.80[ASN][1000 genomes]
rs61981143	0.93[ASN][1000 genomes]
rs8022148	0.80[ASN][1000 genomes]
rs941745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs941749	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32887800-32901800	Weak transcription	Ovary	ovary
2	chr14:32891800-32899400	Weak transcription	Osteobl	bone
3	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:32895200-32902200	Enhancers	Brain Hippocampus Middle	brain
5	chr14:32895400-32899000	Enhancers	Fetal Heart	heart
6	chr14:32895800-32898600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:32895800-32899200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:32896000-32898600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:32896200-32899200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:32896200-32902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:32896400-32900400	Enhancers	Brain Cingulate Gyrus	brain
12	chr14:32896600-32899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:32896600-32899600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:32896600-32902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:32896600-32902000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:32896800-32903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:32897200-32899400	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr14:32897400-32899000	Enhancers	Fetal Lung	lung
19	chr14:32897400-32899600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:32897600-32899000	Active TSS	Right Ventricle	heart
21	chr14:32897600-32899600	Active TSS	Stomach Smooth Muscle	stomach
22	chr14:32897600-32899800	Active TSS	Colon Smooth Muscle	Colon
23	chr14:32897600-32901200	Enhancers	Brain Substantia Nigra	brain
24	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain
25	chr14:32897800-32898800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:32898000-32899400	Weak transcription	Aorta	Aorta
27	chr14:32898000-32899400	Weak transcription	NH-A	brain
28	chr14:32898000-32900000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr14:32898000-32902000	Weak transcription	Left Ventricle	heart
30	chr14:32898000-32902600	Weak transcription	Brain Germinal Matrix	brain
31	chr14:32898000-32906200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:32898200-32899200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr14:32898200-32899800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr14:32898200-32901800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:32898200-32908200	Weak transcription	Right Atrium	heart
36	chr14:32898400-32899200	Enhancers	Brain Anterior Caudate	brain
37	chr14:32898400-32899200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:32898400-32901200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:32898400-32901800	Weak transcription	Brain Angular Gyrus	brain
40	chr14:32898400-32902200	Weak transcription	Esophagus	oesophagus
41	chr14:32898400-32902800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:32898400-32903600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:32898400-32908400	Weak transcription	Psoas Muscle	Psoas

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