Variant report

Variant	rs10147675
Chromosome Location	chr14:103846207-103846208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:103809174..103813493-chr14:103841708..103846208,8	K562	blood:
2	chr14:103799169..103802827-chr14:103845103..103848827,4	MCF-7	breast:
3	chr14:103799041..103818802-chr14:103836567..103862153,82	K562	blood:
4	chr14:103799924..103804064-chr14:103842479..103846418,7	K562	blood:
5	chr14:103838998..103840691-chr14:103845368..103847242,2	MCF-7	breast:
6	chr14:103798840..103802576-chr14:103844404..103847803,3	MCF-7	breast:
7	chr14:103842274..103847138-chr14:103849021..103854867,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100664	Chromatin interaction
ENSG00000075413	Chromatin interaction
ENSG00000272533	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10132290	1.00[AMR][1000 genomes]
rs10133386	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135716	1.00[AMR][1000 genomes]
rs10138651	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138842	1.00[AMR][1000 genomes]
rs10141919	1.00[AMR][1000 genomes]
rs10145990	1.00[AMR][1000 genomes]
rs10146864	1.00[AMR][1000 genomes]
rs10148672	1.00[AMR][1000 genomes]
rs10151314	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851727	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379421	1.00[AMR][1000 genomes]
rs28631776	1.00[AMR][1000 genomes]
rs35273920	1.00[AMR][1000 genomes]
rs35586956	1.00[AMR][1000 genomes]
rs56134485	1.00[AMR][1000 genomes]
rs56305318	1.00[AMR][1000 genomes]
rs59330484	1.00[AMR][1000 genomes]
rs59988848	1.00[AMR][1000 genomes]
rs60236703	1.00[AMR][1000 genomes]
rs61651942	1.00[AMR][1000 genomes]
rs73353049	1.00[AMR][1000 genomes]
rs73359944	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv542200	chr14:103838939-103868007	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103839200-103850800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:103839600-103850600	Weak transcription	Esophagus	oesophagus
3	chr14:103844600-103849200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:103845400-103851000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:103845600-103850800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:103846000-103846400	Enhancers	HepG2	liver
7	chr14:103846200-103848200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:103846200-103848400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr14:103846200-103848800	Weak transcription	K562	blood
10	chr14:103846200-103850600	Enhancers	Primary neutrophils fromperipheralblood	blood

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